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Template:STRUCTURE 1tf6
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| - | {{ | + | {{Structure |
| - | |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1tf6, resolution 3.10Å (<scene name='initialview01'> | + | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1tf6]], resolution 3.10Å (<scene name='initialview01'>default scene</scene>)}}} |
|SITE= <scene name='pdbsite=AN1:Zn-Binding+Site'>AN1</scene>, <scene name='pdbsite=AN2:Zn-Binding+Site'>AN2</scene>, <scene name='pdbsite=AN3:Zn-Binding+Site'>AN3</scene>, <scene name='pdbsite=AN4:Zn-Binding+Site'>AN4</scene>, <scene name='pdbsite=AN5:Zn-Binding+Site'>AN5</scene>, <scene name='pdbsite=AN6:Zn-Binding+Site'>AN6</scene>, <scene name='pdbsite=DN1:Zn-Binding+Site'>DN1</scene>, <scene name='pdbsite=DN2:Zn-Binding+Site'>DN2</scene>, <scene name='pdbsite=DN3:Zn-Binding+Site'>DN3</scene>, <scene name='pdbsite=DN4:Zn-Binding+Site'>DN4</scene>, <scene name='pdbsite=DN5:Zn-Binding+Site'>DN5</scene> and <scene name='pdbsite=DN6:Zn-Binding'>DN6</scene> | |SITE= <scene name='pdbsite=AN1:Zn-Binding+Site'>AN1</scene>, <scene name='pdbsite=AN2:Zn-Binding+Site'>AN2</scene>, <scene name='pdbsite=AN3:Zn-Binding+Site'>AN3</scene>, <scene name='pdbsite=AN4:Zn-Binding+Site'>AN4</scene>, <scene name='pdbsite=AN5:Zn-Binding+Site'>AN5</scene>, <scene name='pdbsite=AN6:Zn-Binding+Site'>AN6</scene>, <scene name='pdbsite=DN1:Zn-Binding+Site'>DN1</scene>, <scene name='pdbsite=DN2:Zn-Binding+Site'>DN2</scene>, <scene name='pdbsite=DN3:Zn-Binding+Site'>DN3</scene>, <scene name='pdbsite=DN4:Zn-Binding+Site'>DN4</scene>, <scene name='pdbsite=DN5:Zn-Binding+Site'>DN5</scene> and <scene name='pdbsite=DN6:Zn-Binding'>DN6</scene> | ||
|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> | |LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> | ||
| Line 9: | Line 9: | ||
|COMPONENT={{GO|id=GO:0005622 | text = intracellular}}{{GO|id=GO:0005634 | text = nucleus}} | |COMPONENT={{GO|id=GO:0005622 | text = intracellular}}{{GO|id=GO:0005634 | text = nucleus}} | ||
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013087 Ipr013087], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015880 Ipr015880], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR007087 Ipr007087]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00096 PF00096]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45064 d1tf6a5], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45061 d1tf6a2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45065 d1tf6a6], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45062 d1tf6a3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45063 d1tf6a4], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45060 d1tf6a1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45070 d1tf6d5], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45071 d1tf6d6], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45068 d1tf6d3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45069 d1tf6d4], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45066 d1tf6d1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45067 d1tf6d2]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P03001 P03001]</span> | |SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013087 Ipr013087], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015880 Ipr015880], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR007087 Ipr007087]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00096 PF00096]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45064 d1tf6a5], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45061 d1tf6a2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45065 d1tf6a6], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45062 d1tf6a3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45063 d1tf6a4], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45060 d1tf6a1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45070 d1tf6d5], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45071 d1tf6d6], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45068 d1tf6d3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45069 d1tf6d4], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45066 d1tf6d1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=45067 d1tf6d2]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P03001 P03001]</span> | ||
| + | |CONSURF={{!}}- | ||
| + | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | ||
| + | {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | ||
| + | {{!}} '''Toggle Conservation Colors:''' | ||
| + | {{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | ||
| + | Rows = identical sequences: | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>A [x]</text> | ||
| + | <name>jmb_1tf6_A</name> | ||
| + | <title>toggle chain A</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>C [x]</text> | ||
| + | <name>jmb_1tf6_C</name> | ||
| + | <title>toggle chain C</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | |||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>B [x]</text> | ||
| + | <name>jmb_1tf6_B</name> | ||
| + | <title>toggle chain B</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>D [x]</text> | ||
| + | <name>jmb_1tf6_D</name> | ||
| + | <title>toggle chain D</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | |||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>E [x]</text> | ||
| + | <name>jmb_1tf6_E</name> | ||
| + | <title>toggle chain E</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>F [x]</text> | ||
| + | <name>jmb_1tf6_F</name> | ||
| + | <title>toggle chain F</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | |||
}} | }} | ||
Revision as of 13:30, 17 February 2009
| |||||||||
| 1tf6, resolution 3.10Å () | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Sites: | , , , , , , , , , , and | ||||||||
| Ligands: | |||||||||
| Domains: | COG5048 | ||||||||
| |||||||||
| |||||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||

