This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Template:STRUCTURE 1prh
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| - | {{ | + | {{Structure |
| - | |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1prh, resolution 3.50Å (<scene name='initialview01'> | + | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1prh]], resolution 3.50Å (<scene name='initialview01'>default scene</scene>)}}} |
|LIGAND= <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene> | |LIGAND= <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene> | ||
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam03098 An_peroxidase], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054 EGF_CA]</span> | |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam03098 An_peroxidase], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054 EGF_CA]</span> | ||
| Line 8: | Line 8: | ||
|COMPONENT={{GO|id=GO:0005792 | text = microsome}}{{GO|id=GO:0016020 | text = membrane}}{{GO|id=GO:0005634 | text = nucleus}}{{GO|id=GO:0005737 | text = cytoplasm}}{{GO|id=GO:0005783 | text = endoplasmic reticulum}}{{GO|id=GO:0016021 | text = integral to membrane}} | |COMPONENT={{GO|id=GO:0005792 | text = microsome}}{{GO|id=GO:0016020 | text = membrane}}{{GO|id=GO:0005634 | text = nucleus}}{{GO|id=GO:0005737 | text = cytoplasm}}{{GO|id=GO:0005783 | text = endoplasmic reticulum}}{{GO|id=GO:0016021 | text = integral to membrane}} | ||
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1prhA02 1Prha02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1prhA01 1Prha01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1prhB02 1Prhb02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1prhB01 1Prhb01]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000742 Ipr000742], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010255 Ipr010255], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013032 Ipr013032], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006210 Ipr006210], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002007 Ipr002007], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006209 Ipr006209]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00008 PF00008], [http://pfam.sanger.ac.uk/family?acc=PF03098 PF03098]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=44253 d1prha2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=18710 d1prha1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=44254 d1prhb2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=18711 d1prhb1]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P05979 P05979]</span> | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1prhA02 1Prha02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1prhA01 1Prha01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1prhB02 1Prhb02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1prhB01 1Prhb01]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000742 Ipr000742], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010255 Ipr010255], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013032 Ipr013032], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006210 Ipr006210], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002007 Ipr002007], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006209 Ipr006209]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00008 PF00008], [http://pfam.sanger.ac.uk/family?acc=PF03098 PF03098]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=44253 d1prha2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=18710 d1prha1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=44254 d1prhb2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=18711 d1prhb1]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P05979 P05979]</span> | ||
| + | |CONSURF={{!}}- | ||
| + | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | ||
| + | {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | ||
| + | {{!}} '''Toggle Conservation Colors:''' | ||
| + | {{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | ||
| + | Rows = identical sequences: | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>A [x]</text> | ||
| + | <name>jmb_1prh_A</name> | ||
| + | <title>toggle chain A</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>B [x]</text> | ||
| + | <name>jmb_1prh_B</name> | ||
| + | <title>toggle chain B</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | |||
}} | }} | ||
Revision as of 01:55, 18 February 2009
