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User:Michael Strong/H1N1/NP
From Proteopedia
(Difference between revisions)
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[[User:Michael_Strong|home]] <font color="blue">•</font> [[User:Michael_Strong/H1N1|H1N1]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/PB2|PB2]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PB1|PB1]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PA|PA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/HA|HA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NP|NP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NA|NA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/MP|MP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NS|NS]] | [[User:Michael_Strong|home]] <font color="blue">•</font> [[User:Michael_Strong/H1N1|H1N1]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/PB2|PB2]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PB1|PB1]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PA|PA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/HA|HA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NP|NP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NA|NA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/MP|MP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NS|NS]] | ||
| + | == Structure == | ||
| + | |||
| + | <applet load='MSNP1.pdb' size='300' frame='true' align='center' caption='NP Homology Model, Mexico Strain, A/Mexico/InDRE4487/2009, residues 28-502, 94% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2q06 2q06]' scene ='User:Michael_Strong/H1N1/NP/MSA/1/1'/> | ||
| + | |||
| + | == Sequence Polymorphisms == | ||
| + | |||
| + | {| class="wikitable" | ||
| + | |Protein | ||
| + | |Polymorphism | ||
| + | |Strain with Polymorphism | ||
| + | |Number of Strains with Polymorphism | ||
| + | |---- | ||
| + | |NP | ||
| + | |G22D | ||
| + | |gi|229598884_A/Texas/15/2009 | ||
| + | |1 | ||
| + | |---- | ||
| + | |NP | ||
| + | |V35A | ||
| + | |gi|237624329_A/swine/Alberta/O | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/35/1'>35</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |S90N | ||
| + | |gi|229536012_A/Arizona/01/2009 | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/90/1'>90</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |V106I | ||
| + | |gi|229892748_A/Canada-ON/RV152 | ||
| + | |28 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/106/1'>106</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |Q128L | ||
| + | |gi|227977162_A/California/07/2 | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/128/1'>128</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |L139I | ||
| + | |gi|229783384_A/New_York/1669/2 | ||
| + | |2 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/139/1'>139</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |E198K | ||
| + | |gi|237624329_A/swine/Alberta/O | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/198/1'>198</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |N208D | ||
| + | |gi|237624329_A/swine/Alberta/O | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/208/1'>208</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |V223I | ||
| + | |gi|229536102_A/Nebraska/02/200 | ||
| + | |2 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/223/1'>223</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |M228T | ||
| + | |gi|237624329_A/swine/Alberta/O | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/228/1'>228</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |A257T | ||
| + | |gi|229396492_A/Ohio/07/2009 | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/257/1'>257</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |V349I | ||
| + | |gi|229536131_A/Colorado/03/200 | ||
| + | |2 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/349/1'>349</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |V358M | ||
| + | |gi|229598873_A/Ohio/07/2009 | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/358/1'>358</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |V369I | ||
| + | |gi|229536077_A/Indiana/09/2009 | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/369/1'>369</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |T379I | ||
| + | |gi|229536102_A/Nebraska/02/200 | ||
| + | |18 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/379/1'>379</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |T379V | ||
| + | |gi|229892752_A/Canada-NS/RV153 | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/379/1'>379</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |D381N | ||
| + | |gi|229396423_A/California/08/2 | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/381/1'>381</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |D381Y | ||
| + | |gi|237624329_A/swine/Alberta/O | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/381/1'>381</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |T402A | ||
| + | |gi|237511901_A/Mexico/4516/200 | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/402/1'>402</scene> | ||
| + | |---- | ||
| + | |NP | ||
| + | |S456N | ||
| + | |gi|229536077_A/Indiana/09/2009 | ||
| + | |1 | ||
| + | |<scene name='User:Michael_Strong/H1N1/NP/MSA/456/1'>456</scene> | ||
| + | |---- | ||
| + | |} | ||
| + | |||
| + | <scene name='User:Michael_Strong/H1N1/NP/MSA/All/1'>All Polymorphisms</scene> | ||
| + | |||
| + | == Multiple Sequence Alignment == | ||
| + | H1N1 Swine Flu Multiple Sequence Alignment of NP Protein, 67 sequences | ||
| + | |||
| + | <pre> | ||
| + | gi|229536005_A/Kansas/03/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229783384_A/New_York/1669/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229536077_A/Indiana/09/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|227831778_A/California/06/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|227831761_A/California/05/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229462701_A/Valencia/GP4/20 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229462713_A/Pais_Vasco/GP20 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229462689_A/Castilla-La_Man ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229536066_A/Texas/07/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229536024_A/Minnesota/02/20 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229536038_A/Arizona/02/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229783405_A/New_York/1682/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|237511891_A/Mexico/4486/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|237511915_A/Mexico/4108/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|227977162_A/California/07/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229536012_A/Arizona/01/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229598884_A/Texas/15/2009 ------MASQGTKRSYEQMETDGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229299508_A/Texas/05/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|227831792_A/Texas/05/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229299528_A/Texas/04/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|227831819_A/Texas/04/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|227977106_A/California/04/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|227809832_A/California/04/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229396465_A/Texas/06/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229462725_A/Castilla-La_Man ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229535799_A/Texas/09/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229535951_A/Texas/08/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229535999_A/Kansas/02/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|237511917_A/Mexico/4115/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229536057_A/New_York/20/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229396355_A/New_York/12/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229536051_A/New_York/20/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229396481_A/New_York/19/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|237511911_A/Mexico/4482/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|237511913_A/Mexico/4603/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|237511895_A/Mexico/4604/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229783369_A/Korea/01/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229535818_A/California/14/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229535905_A/Massachusetts/0 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229536096_A/Massachusetts/0 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229536109_A/Michigan/02/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229536123_A/New_York/13/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229535786_A/New_York/22/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229396367_A/New_York/06/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229396437_A/New_York/10/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229396377_A/New_York/11/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229396453_A/New_York/15/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229396393_A/New_York/18/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229396417_A/New_York/23/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229396406_A/New_York/31/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229598873_A/Ohio/07/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229396492_A/Ohio/07/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|237511901_A/Mexico/4516/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229892750_A/Canada-AB/RV153 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50 | ||
| + | gi|229892746_A/Canada-ON/RV152 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50 | ||
| + | gi|229892748_A/Canada-ON/RV152 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50 | ||
| + | gi|229484052_A/Canada-ON/RV152 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50 | ||
| + | gi|229892744_A/Mexico/InDRE411 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50 | ||
| + | gi|229484050_A/Mexico/InDRE448 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50 | ||
| + | gi|229396423_A/California/08/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229535987_A/South_Carolina/ ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229536131_A/Colorado/03/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229892752_A/Canada-NS/RV153 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50 | ||
| + | gi|229536102_A/Nebraska/02/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44 | ||
| + | gi|229892742_A/Canada-NS/RV153 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50 | ||
| + | gi|229484048_A/Canada-NS/RV153 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50 | ||
| + | gi|237624329_A/swine/Alberta/O MSDIEAMASQGTKRSYEQMETGGERQDATEIRASAGRMIGGIGRFYIQMC 50 | ||
| + | ***************.************.*************** | ||
| + | |||
| + | gi|229536005_A/Kansas/03/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229783384_A/New_York/1669/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229536077_A/Indiana/09/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|227831778_A/California/06/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|227831761_A/California/05/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229462701_A/Valencia/GP4/20 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229462713_A/Pais_Vasco/GP20 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229462689_A/Castilla-La_Man TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229536066_A/Texas/07/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229536024_A/Minnesota/02/20 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229536038_A/Arizona/02/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229783405_A/New_York/1682/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|237511891_A/Mexico/4486/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|237511915_A/Mexico/4108/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|227977162_A/California/07/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229536012_A/Arizona/01/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPNAGKDPKKTGG 94 | ||
| + | gi|229598884_A/Texas/15/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229299508_A/Texas/05/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|227831792_A/Texas/05/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229299528_A/Texas/04/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|227831819_A/Texas/04/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|227977106_A/California/04/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|227809832_A/California/04/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229396465_A/Texas/06/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229462725_A/Castilla-La_Man TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229535799_A/Texas/09/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229535951_A/Texas/08/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229535999_A/Kansas/02/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|237511917_A/Mexico/4115/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229536057_A/New_York/20/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229396355_A/New_York/12/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229536051_A/New_York/20/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229396481_A/New_York/19/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|237511911_A/Mexico/4482/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|237511913_A/Mexico/4603/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|237511895_A/Mexico/4604/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229783369_A/Korea/01/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229535818_A/California/14/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229535905_A/Massachusetts/0 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229536096_A/Massachusetts/0 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229536109_A/Michigan/02/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229536123_A/New_York/13/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229535786_A/New_York/22/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229396367_A/New_York/06/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229396437_A/New_York/10/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229396377_A/New_York/11/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229396453_A/New_York/15/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229396393_A/New_York/18/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229396417_A/New_York/23/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229396406_A/New_York/31/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229598873_A/Ohio/07/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229396492_A/Ohio/07/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|237511901_A/Mexico/4516/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229892750_A/Canada-AB/RV153 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100 | ||
| + | gi|229892746_A/Canada-ON/RV152 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100 | ||
| + | gi|229892748_A/Canada-ON/RV152 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100 | ||
| + | gi|229484052_A/Canada-ON/RV152 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100 | ||
| + | gi|229892744_A/Mexico/InDRE411 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100 | ||
| + | gi|229484050_A/Mexico/InDRE448 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100 | ||
| + | gi|229396423_A/California/08/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229535987_A/South_Carolina/ TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229536131_A/Colorado/03/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229892752_A/Canada-NS/RV153 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100 | ||
| + | gi|229536102_A/Nebraska/02/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94 | ||
| + | gi|229892742_A/Canada-NS/RV153 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100 | ||
| + | gi|229484048_A/Canada-NS/RV153 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100 | ||
| + | gi|237624329_A/swine/Alberta/O TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100 | ||
| + | ***************************************.********** | ||
| + | |||
| + | gi|229536005_A/Kansas/03/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGITHIMIWHSNLN 144 | ||
| + | gi|229783384_A/New_York/1669/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGITHIMIWHSNLN 144 | ||
| + | gi|229536077_A/Indiana/09/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|227831778_A/California/06/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|227831761_A/California/05/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229462701_A/Valencia/GP4/20 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229462713_A/Pais_Vasco/GP20 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229462689_A/Castilla-La_Man PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229536066_A/Texas/07/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229536024_A/Minnesota/02/20 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229536038_A/Arizona/02/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229783405_A/New_York/1682/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|237511891_A/Mexico/4486/200 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|237511915_A/Mexico/4108/200 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|227977162_A/California/07/2 PIYRRVDGKWMRELILYDKXEIRRVWRLANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229536012_A/Arizona/01/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229598884_A/Texas/15/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229299508_A/Texas/05/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|227831792_A/Texas/05/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229299528_A/Texas/04/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|227831819_A/Texas/04/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|227977106_A/California/04/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|227809832_A/California/04/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229396465_A/Texas/06/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229462725_A/Castilla-La_Man PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229535799_A/Texas/09/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229535951_A/Texas/08/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229535999_A/Kansas/02/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|237511917_A/Mexico/4115/200 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229536057_A/New_York/20/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229396355_A/New_York/12/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229536051_A/New_York/20/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229396481_A/New_York/19/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|237511911_A/Mexico/4482/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|237511913_A/Mexico/4603/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|237511895_A/Mexico/4604/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229783369_A/Korea/01/2009 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229535818_A/California/14/2 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229535905_A/Massachusetts/0 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229536096_A/Massachusetts/0 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229536109_A/Michigan/02/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229536123_A/New_York/13/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229535786_A/New_York/22/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229396367_A/New_York/06/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229396437_A/New_York/10/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229396377_A/New_York/11/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229396453_A/New_York/15/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229396393_A/New_York/18/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229396417_A/New_York/23/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229396406_A/New_York/31/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229598873_A/Ohio/07/2009 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229396492_A/Ohio/07/2009 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|237511901_A/Mexico/4516/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229892750_A/Canada-AB/RV153 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150 | ||
| + | gi|229892746_A/Canada-ON/RV152 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150 | ||
| + | gi|229892748_A/Canada-ON/RV152 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150 | ||
| + | gi|229484052_A/Canada-ON/RV152 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150 | ||
| + | gi|229892744_A/Mexico/InDRE411 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150 | ||
| + | gi|229484050_A/Mexico/InDRE448 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150 | ||
| + | gi|229396423_A/California/08/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229535987_A/South_Carolina/ PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229536131_A/Colorado/03/200 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229892752_A/Canada-NS/RV153 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150 | ||
| + | gi|229536102_A/Nebraska/02/200 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144 | ||
| + | gi|229892742_A/Canada-NS/RV153 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150 | ||
| + | gi|229484048_A/Canada-NS/RV153 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150 | ||
| + | gi|237624329_A/swine/Alberta/O PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150 | ||
| + | *****:************* ******* **********:*********** | ||
| + | |||
| + | gi|229536005_A/Kansas/03/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229783384_A/New_York/1669/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229536077_A/Indiana/09/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|227831778_A/California/06/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|227831761_A/California/05/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229462701_A/Valencia/GP4/20 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229462713_A/Pais_Vasco/GP20 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229462689_A/Castilla-La_Man DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229536066_A/Texas/07/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229536024_A/Minnesota/02/20 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229536038_A/Arizona/02/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229783405_A/New_York/1682/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|237511891_A/Mexico/4486/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|237511915_A/Mexico/4108/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|227977162_A/California/07/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229536012_A/Arizona/01/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229598884_A/Texas/15/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229299508_A/Texas/05/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|227831792_A/Texas/05/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229299528_A/Texas/04/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|227831819_A/Texas/04/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|227977106_A/California/04/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|227809832_A/California/04/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229396465_A/Texas/06/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229462725_A/Castilla-La_Man DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229535799_A/Texas/09/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229535951_A/Texas/08/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229535999_A/Kansas/02/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|237511917_A/Mexico/4115/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229536057_A/New_York/20/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229396355_A/New_York/12/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229536051_A/New_York/20/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229396481_A/New_York/19/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|237511911_A/Mexico/4482/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|237511913_A/Mexico/4603/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|237511895_A/Mexico/4604/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229783369_A/Korea/01/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229535818_A/California/14/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229535905_A/Massachusetts/0 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229536096_A/Massachusetts/0 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229536109_A/Michigan/02/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229536123_A/New_York/13/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229535786_A/New_York/22/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229396367_A/New_York/06/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229396437_A/New_York/10/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229396377_A/New_York/11/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229396453_A/New_York/15/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229396393_A/New_York/18/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229396417_A/New_York/23/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229396406_A/New_York/31/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229598873_A/Ohio/07/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229396492_A/Ohio/07/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|237511901_A/Mexico/4516/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229892750_A/Canada-AB/RV153 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200 | ||
| + | gi|229892746_A/Canada-ON/RV152 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200 | ||
| + | gi|229892748_A/Canada-ON/RV152 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200 | ||
| + | gi|229484052_A/Canada-ON/RV152 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200 | ||
| + | gi|229892744_A/Mexico/InDRE411 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200 | ||
| + | gi|229484050_A/Mexico/InDRE448 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200 | ||
| + | gi|229396423_A/California/08/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229535987_A/South_Carolina/ DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229536131_A/Colorado/03/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229892752_A/Canada-NS/RV153 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200 | ||
| + | gi|229536102_A/Nebraska/02/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194 | ||
| + | gi|229892742_A/Canada-NS/RV153 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200 | ||
| + | gi|229484048_A/Canada-NS/RV153 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200 | ||
| + | gi|237624329_A/swine/Alberta/O DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMKLI 200 | ||
| + | ***********************************************:** | ||
| + | |||
| + | gi|229536005_A/Kansas/03/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229783384_A/New_York/1669/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229536077_A/Indiana/09/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|227831778_A/California/06/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|227831761_A/California/05/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229462701_A/Valencia/GP4/20 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229462713_A/Pais_Vasco/GP20 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229462689_A/Castilla-La_Man RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229536066_A/Texas/07/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229536024_A/Minnesota/02/20 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229536038_A/Arizona/02/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229783405_A/New_York/1682/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|237511891_A/Mexico/4486/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|237511915_A/Mexico/4108/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|227977162_A/California/07/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229536012_A/Arizona/01/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229598884_A/Texas/15/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229299508_A/Texas/05/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|227831792_A/Texas/05/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229299528_A/Texas/04/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|227831819_A/Texas/04/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|227977106_A/California/04/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|227809832_A/California/04/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229396465_A/Texas/06/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229462725_A/Castilla-La_Man RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229535799_A/Texas/09/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229535951_A/Texas/08/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229535999_A/Kansas/02/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|237511917_A/Mexico/4115/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229536057_A/New_York/20/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229396355_A/New_York/12/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229536051_A/New_York/20/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229396481_A/New_York/19/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|237511911_A/Mexico/4482/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|237511913_A/Mexico/4603/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|237511895_A/Mexico/4604/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229783369_A/Korea/01/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229535818_A/California/14/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229535905_A/Massachusetts/0 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229536096_A/Massachusetts/0 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229536109_A/Michigan/02/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229536123_A/New_York/13/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229535786_A/New_York/22/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229396367_A/New_York/06/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229396437_A/New_York/10/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229396377_A/New_York/11/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229396453_A/New_York/15/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229396393_A/New_York/18/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229396417_A/New_York/23/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229396406_A/New_York/31/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229598873_A/Ohio/07/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229396492_A/Ohio/07/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|237511901_A/Mexico/4516/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229892750_A/Canada-AB/RV153 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250 | ||
| + | gi|229892746_A/Canada-ON/RV152 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250 | ||
| + | gi|229892748_A/Canada-ON/RV152 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250 | ||
| + | gi|229484052_A/Canada-ON/RV152 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250 | ||
| + | gi|229892744_A/Mexico/InDRE411 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250 | ||
| + | gi|229484050_A/Mexico/InDRE448 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250 | ||
| + | gi|229396423_A/California/08/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229535987_A/South_Carolina/ RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229536131_A/Colorado/03/200 RMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229892752_A/Canada-NS/RV153 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250 | ||
| + | gi|229536102_A/Nebraska/02/200 RMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMDQVRE 244 | ||
| + | gi|229892742_A/Canada-NS/RV153 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250 | ||
| + | gi|229484048_A/Canada-NS/RV153 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250 | ||
| + | gi|237624329_A/swine/Alberta/O RMIKRGIDDRNFWRGENGRRTRVAYERTCNILKGKFQTAAQRAMMDQVRE 250 | ||
| + | *******:**************:**** ********************** | ||
| + | |||
| + | gi|229536005_A/Kansas/03/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229783384_A/New_York/1669/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229536077_A/Indiana/09/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|227831778_A/California/06/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|227831761_A/California/05/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229462701_A/Valencia/GP4/20 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229462713_A/Pais_Vasco/GP20 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229462689_A/Castilla-La_Man SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229536066_A/Texas/07/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229536024_A/Minnesota/02/20 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229536038_A/Arizona/02/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229783405_A/New_York/1682/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|237511891_A/Mexico/4486/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|237511915_A/Mexico/4108/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|227977162_A/California/07/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229536012_A/Arizona/01/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229598884_A/Texas/15/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229299508_A/Texas/05/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|227831792_A/Texas/05/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229299528_A/Texas/04/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|227831819_A/Texas/04/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|227977106_A/California/04/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|227809832_A/California/04/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229396465_A/Texas/06/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229462725_A/Castilla-La_Man SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229535799_A/Texas/09/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229535951_A/Texas/08/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229535999_A/Kansas/02/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|237511917_A/Mexico/4115/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229536057_A/New_York/20/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229396355_A/New_York/12/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229536051_A/New_York/20/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229396481_A/New_York/19/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|237511911_A/Mexico/4482/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|237511913_A/Mexico/4603/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|237511895_A/Mexico/4604/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229783369_A/Korea/01/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229535818_A/California/14/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229535905_A/Massachusetts/0 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229536096_A/Massachusetts/0 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229536109_A/Michigan/02/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229536123_A/New_York/13/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229535786_A/New_York/22/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229396367_A/New_York/06/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229396437_A/New_York/10/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229396377_A/New_York/11/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229396453_A/New_York/15/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229396393_A/New_York/18/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229396417_A/New_York/23/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229396406_A/New_York/31/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229598873_A/Ohio/07/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229396492_A/Ohio/07/2009 SRNPGNTEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|237511901_A/Mexico/4516/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229892750_A/Canada-AB/RV153 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300 | ||
| + | gi|229892746_A/Canada-ON/RV152 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300 | ||
| + | gi|229892748_A/Canada-ON/RV152 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300 | ||
| + | gi|229484052_A/Canada-ON/RV152 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300 | ||
| + | gi|229892744_A/Mexico/InDRE411 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300 | ||
| + | gi|229484050_A/Mexico/InDRE448 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300 | ||
| + | gi|229396423_A/California/08/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229535987_A/South_Carolina/ SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229536131_A/Colorado/03/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229892752_A/Canada-NS/RV153 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300 | ||
| + | gi|229536102_A/Nebraska/02/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294 | ||
| + | gi|229892742_A/Canada-NS/RV153 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300 | ||
| + | gi|229484048_A/Canada-NS/RV153 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300 | ||
| + | gi|237624329_A/swine/Alberta/O SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300 | ||
| + | ******:******************************************* | ||
| + | |||
| + | gi|229536005_A/Kansas/03/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229783384_A/New_York/1669/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229536077_A/Indiana/09/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|227831778_A/California/06/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|227831761_A/California/05/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229462701_A/Valencia/GP4/20 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229462713_A/Pais_Vasco/GP20 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229462689_A/Castilla-La_Man GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229536066_A/Texas/07/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229536024_A/Minnesota/02/20 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229536038_A/Arizona/02/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229783405_A/New_York/1682/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|237511891_A/Mexico/4486/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|237511915_A/Mexico/4108/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|227977162_A/California/07/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229536012_A/Arizona/01/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229598884_A/Texas/15/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229299508_A/Texas/05/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|227831792_A/Texas/05/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229299528_A/Texas/04/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|227831819_A/Texas/04/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|227977106_A/California/04/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|227809832_A/California/04/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229396465_A/Texas/06/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229462725_A/Castilla-La_Man GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229535799_A/Texas/09/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229535951_A/Texas/08/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229535999_A/Kansas/02/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|237511917_A/Mexico/4115/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229536057_A/New_York/20/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229396355_A/New_York/12/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229536051_A/New_York/20/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229396481_A/New_York/19/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|237511911_A/Mexico/4482/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|237511913_A/Mexico/4603/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|237511895_A/Mexico/4604/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229783369_A/Korea/01/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229535818_A/California/14/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229535905_A/Massachusetts/0 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229536096_A/Massachusetts/0 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229536109_A/Michigan/02/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229536123_A/New_York/13/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229535786_A/New_York/22/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229396367_A/New_York/06/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229396437_A/New_York/10/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229396377_A/New_York/11/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229396453_A/New_York/15/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229396393_A/New_York/18/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229396417_A/New_York/23/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229396406_A/New_York/31/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229598873_A/Ohio/07/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229396492_A/Ohio/07/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|237511901_A/Mexico/4516/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229892750_A/Canada-AB/RV153 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350 | ||
| + | gi|229892746_A/Canada-ON/RV152 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350 | ||
| + | gi|229892748_A/Canada-ON/RV152 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350 | ||
| + | gi|229484052_A/Canada-ON/RV152 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350 | ||
| + | gi|229892744_A/Mexico/InDRE411 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350 | ||
| + | gi|229484050_A/Mexico/InDRE448 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350 | ||
| + | gi|229396423_A/California/08/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229535987_A/South_Carolina/ GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRIS 344 | ||
| + | gi|229536131_A/Colorado/03/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRIS 344 | ||
| + | gi|229892752_A/Canada-NS/RV153 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350 | ||
| + | gi|229536102_A/Nebraska/02/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344 | ||
| + | gi|229892742_A/Canada-NS/RV153 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350 | ||
| + | gi|229484048_A/Canada-NS/RV153 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350 | ||
| + | gi|237624329_A/swine/Alberta/O GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350 | ||
| + | ************************************************:* | ||
| + | |||
| + | gi|229536005_A/Kansas/03/2009 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229783384_A/New_York/1669/2 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229536077_A/Indiana/09/2009 SFIRGKKVIPRGKLSTRGIQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|227831778_A/California/06/2 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|227831761_A/California/05/2 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229462701_A/Valencia/GP4/20 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229462713_A/Pais_Vasco/GP20 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229462689_A/Castilla-La_Man SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229536066_A/Texas/07/2009 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229536024_A/Minnesota/02/20 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229536038_A/Arizona/02/2009 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229783405_A/New_York/1682/2 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|237511891_A/Mexico/4486/200 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|237511915_A/Mexico/4108/200 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|227977162_A/California/07/2 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229536012_A/Arizona/01/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229598884_A/Texas/15/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229299508_A/Texas/05/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|227831792_A/Texas/05/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229299528_A/Texas/04/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|227831819_A/Texas/04/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|227977106_A/California/04/2 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|227809832_A/California/04/2 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229396465_A/Texas/06/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229462725_A/Castilla-La_Man SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229535799_A/Texas/09/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229535951_A/Texas/08/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229535999_A/Kansas/02/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|237511917_A/Mexico/4115/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229536057_A/New_York/20/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229396355_A/New_York/12/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229536051_A/New_York/20/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229396481_A/New_York/19/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|237511911_A/Mexico/4482/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|237511913_A/Mexico/4603/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|237511895_A/Mexico/4604/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229783369_A/Korea/01/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229535818_A/California/14/2 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229535905_A/Massachusetts/0 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229536096_A/Massachusetts/0 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229536109_A/Michigan/02/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229536123_A/New_York/13/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229535786_A/New_York/22/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229396367_A/New_York/06/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229396437_A/New_York/10/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229396377_A/New_York/11/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229396453_A/New_York/15/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229396393_A/New_York/18/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229396417_A/New_York/23/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229396406_A/New_York/31/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229598873_A/Ohio/07/2009 SFIRGKKMIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229396492_A/Ohio/07/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|237511901_A/Mexico/4516/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229892750_A/Canada-AB/RV153 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400 | ||
| + | gi|229892746_A/Canada-ON/RV152 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400 | ||
| + | gi|229892748_A/Canada-ON/RV152 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400 | ||
| + | gi|229484052_A/Canada-ON/RV152 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400 | ||
| + | gi|229892744_A/Mexico/InDRE411 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400 | ||
| + | gi|229484050_A/Mexico/InDRE448 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400 | ||
| + | gi|229396423_A/California/08/2 SFIRGKKVIPRGKLSTRGVQIASNENVETMNSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229535987_A/South_Carolina/ SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229536131_A/Colorado/03/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229892752_A/Canada-NS/RV153 SFIRGKKVIPRGKLSTRGVQIASNENVEVMDSNTLELRSRYWAIRTRSGG 400 | ||
| + | gi|229536102_A/Nebraska/02/200 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394 | ||
| + | gi|229892742_A/Canada-NS/RV153 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 400 | ||
| + | gi|229484048_A/Canada-NS/RV153 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 400 | ||
| + | gi|237624329_A/swine/Alberta/O SFIRGKKVIPRGKLSTRGVQIASNENVEIMYSNTLELRSRYWAIRTRSGG 400 | ||
| + | *******:**********:********* * ******************* | ||
| + | |||
| + | gi|229536005_A/Kansas/03/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229783384_A/New_York/1669/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229536077_A/Indiana/09/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|227831778_A/California/06/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|227831761_A/California/05/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229462701_A/Valencia/GP4/20 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229462713_A/Pais_Vasco/GP20 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229462689_A/Castilla-La_Man NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229536066_A/Texas/07/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229536024_A/Minnesota/02/20 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229536038_A/Arizona/02/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229783405_A/New_York/1682/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|237511891_A/Mexico/4486/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|237511915_A/Mexico/4108/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|227977162_A/California/07/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229536012_A/Arizona/01/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229598884_A/Texas/15/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229299508_A/Texas/05/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|227831792_A/Texas/05/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229299528_A/Texas/04/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|227831819_A/Texas/04/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|227977106_A/California/04/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|227809832_A/California/04/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229396465_A/Texas/06/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229462725_A/Castilla-La_Man NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229535799_A/Texas/09/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229535951_A/Texas/08/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229535999_A/Kansas/02/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|237511917_A/Mexico/4115/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229536057_A/New_York/20/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229396355_A/New_York/12/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229536051_A/New_York/20/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229396481_A/New_York/19/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|237511911_A/Mexico/4482/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|237511913_A/Mexico/4603/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|237511895_A/Mexico/4604/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229783369_A/Korea/01/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229535818_A/California/14/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229535905_A/Massachusetts/0 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229536096_A/Massachusetts/0 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229536109_A/Michigan/02/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229536123_A/New_York/13/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229535786_A/New_York/22/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229396367_A/New_York/06/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229396437_A/New_York/10/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229396377_A/New_York/11/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229396453_A/New_York/15/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229396393_A/New_York/18/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229396417_A/New_York/23/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229396406_A/New_York/31/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229598873_A/Ohio/07/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229396492_A/Ohio/07/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|237511901_A/Mexico/4516/200 NANQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229892750_A/Canada-AB/RV153 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450 | ||
| + | gi|229892746_A/Canada-ON/RV152 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450 | ||
| + | gi|229892748_A/Canada-ON/RV152 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450 | ||
| + | gi|229484052_A/Canada-ON/RV152 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450 | ||
| + | gi|229892744_A/Mexico/InDRE411 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450 | ||
| + | gi|229484050_A/Mexico/InDRE448 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450 | ||
| + | gi|229396423_A/California/08/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229535987_A/South_Carolina/ NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229536131_A/Colorado/03/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229892752_A/Canada-NS/RV153 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450 | ||
| + | gi|229536102_A/Nebraska/02/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444 | ||
| + | gi|229892742_A/Canada-NS/RV153 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450 | ||
| + | gi|229484048_A/Canada-NS/RV153 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450 | ||
| + | gi|237624329_A/swine/Alberta/O NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450 | ||
| + | *:************************************************ | ||
| + | |||
| + | gi|229536005_A/Kansas/03/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229783384_A/New_York/1669/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229536077_A/Indiana/09/2009 IRMMENAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|227831778_A/California/06/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|227831761_A/California/05/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229462701_A/Valencia/GP4/20 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229462713_A/Pais_Vasco/GP20 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229462689_A/Castilla-La_Man IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229536066_A/Texas/07/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229536024_A/Minnesota/02/20 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229536038_A/Arizona/02/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229783405_A/New_York/1682/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|237511891_A/Mexico/4486/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|237511915_A/Mexico/4108/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|227977162_A/California/07/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229536012_A/Arizona/01/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229598884_A/Texas/15/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229299508_A/Texas/05/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|227831792_A/Texas/05/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229299528_A/Texas/04/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|227831819_A/Texas/04/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|227977106_A/California/04/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|227809832_A/California/04/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229396465_A/Texas/06/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229462725_A/Castilla-La_Man IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229535799_A/Texas/09/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229535951_A/Texas/08/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229535999_A/Kansas/02/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|237511917_A/Mexico/4115/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229536057_A/New_York/20/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229396355_A/New_York/12/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229536051_A/New_York/20/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229396481_A/New_York/19/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|237511911_A/Mexico/4482/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|237511913_A/Mexico/4603/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|237511895_A/Mexico/4604/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229783369_A/Korea/01/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229535818_A/California/14/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229535905_A/Massachusetts/0 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229536096_A/Massachusetts/0 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229536109_A/Michigan/02/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229536123_A/New_York/13/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229535786_A/New_York/22/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229396367_A/New_York/06/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229396437_A/New_York/10/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229396377_A/New_York/11/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229396453_A/New_York/15/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229396393_A/New_York/18/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229396417_A/New_York/23/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229396406_A/New_York/31/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229598873_A/Ohio/07/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229396492_A/Ohio/07/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|237511901_A/Mexico/4516/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229892750_A/Canada-AB/RV153 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500 | ||
| + | gi|229892746_A/Canada-ON/RV152 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500 | ||
| + | gi|229892748_A/Canada-ON/RV152 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500 | ||
| + | gi|229484052_A/Canada-ON/RV152 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500 | ||
| + | gi|229892744_A/Mexico/InDRE411 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500 | ||
| + | gi|229484050_A/Mexico/InDRE448 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500 | ||
| + | gi|229396423_A/California/08/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229535987_A/South_Carolina/ IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229536131_A/Colorado/03/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229892752_A/Canada-NS/RV153 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500 | ||
| + | gi|229536102_A/Nebraska/02/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494 | ||
| + | gi|229892742_A/Canada-NS/RV153 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500 | ||
| + | gi|229484048_A/Canada-NS/RV153 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500 | ||
| + | gi|237624329_A/swine/Alberta/O IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500 | ||
| + | *****.******************************************** | ||
| + | |||
| + | gi|229536005_A/Kansas/03/2009 EYDS 498 | ||
| + | gi|229783384_A/New_York/1669/2 EYDS 498 | ||
| + | gi|229536077_A/Indiana/09/2009 EYDS 498 | ||
| + | gi|227831778_A/California/06/2 EYDS 498 | ||
| + | gi|227831761_A/California/05/2 EYDS 498 | ||
| + | gi|229462701_A/Valencia/GP4/20 EYDS 498 | ||
| + | gi|229462713_A/Pais_Vasco/GP20 EYDS 498 | ||
| + | gi|229462689_A/Castilla-La_Man EYDS 498 | ||
| + | gi|229536066_A/Texas/07/2009 EYDS 498 | ||
| + | gi|229536024_A/Minnesota/02/20 EYDS 498 | ||
| + | gi|229536038_A/Arizona/02/2009 EYDS 498 | ||
| + | gi|229783405_A/New_York/1682/2 EYDS 498 | ||
| + | gi|237511891_A/Mexico/4486/200 EYDS 498 | ||
| + | gi|237511915_A/Mexico/4108/200 EYDS 498 | ||
| + | gi|227977162_A/California/07/2 EYDS 498 | ||
| + | gi|229536012_A/Arizona/01/2009 EYDS 498 | ||
| + | gi|229598884_A/Texas/15/2009 EYDS 498 | ||
| + | gi|229299508_A/Texas/05/2009 EYDS 498 | ||
| + | gi|227831792_A/Texas/05/2009 EYDS 498 | ||
| + | gi|229299528_A/Texas/04/2009 EYDS 498 | ||
| + | gi|227831819_A/Texas/04/2009 EYDS 498 | ||
| + | gi|227977106_A/California/04/2 EYDS 498 | ||
| + | gi|227809832_A/California/04/2 EYDS 498 | ||
| + | gi|229396465_A/Texas/06/2009 EYDS 498 | ||
| + | gi|229462725_A/Castilla-La_Man EYDS 498 | ||
| + | gi|229535799_A/Texas/09/2009 EYDS 498 | ||
| + | gi|229535951_A/Texas/08/2009 EYDS 498 | ||
| + | gi|229535999_A/Kansas/02/2009 EYDS 498 | ||
| + | gi|237511917_A/Mexico/4115/200 EYDS 498 | ||
| + | gi|229536057_A/New_York/20/200 EYDS 498 | ||
| + | gi|229396355_A/New_York/12/200 EY-- 496 | ||
| + | gi|229536051_A/New_York/20/200 EYDS 498 | ||
| + | gi|229396481_A/New_York/19/200 EYDS 498 | ||
| + | gi|237511911_A/Mexico/4482/200 EYDS 498 | ||
| + | gi|237511913_A/Mexico/4603/200 EYDS 498 | ||
| + | gi|237511895_A/Mexico/4604/200 EYDS 498 | ||
| + | gi|229783369_A/Korea/01/2009 EYDS 498 | ||
| + | gi|229535818_A/California/14/2 EYDS 498 | ||
| + | gi|229535905_A/Massachusetts/0 EYDS 498 | ||
| + | gi|229536096_A/Massachusetts/0 EYDS 498 | ||
| + | gi|229536109_A/Michigan/02/200 EYDS 498 | ||
| + | gi|229536123_A/New_York/13/200 EYDS 498 | ||
| + | gi|229535786_A/New_York/22/200 EYDS 498 | ||
| + | gi|229396367_A/New_York/06/200 EYDS 498 | ||
| + | gi|229396437_A/New_York/10/200 EYDS 498 | ||
| + | gi|229396377_A/New_York/11/200 EYDS 498 | ||
| + | gi|229396453_A/New_York/15/200 EYDS 498 | ||
| + | gi|229396393_A/New_York/18/200 EYDS 498 | ||
| + | gi|229396417_A/New_York/23/200 EYDS 498 | ||
| + | gi|229396406_A/New_York/31/200 EYDS 498 | ||
| + | gi|229598873_A/Ohio/07/2009 EYDS 498 | ||
| + | gi|229396492_A/Ohio/07/2009 EYDS 498 | ||
| + | gi|237511901_A/Mexico/4516/200 EYDS 498 | ||
| + | gi|229892750_A/Canada-AB/RV153 EYDS 504 | ||
| + | gi|229892746_A/Canada-ON/RV152 EYDS 504 | ||
| + | gi|229892748_A/Canada-ON/RV152 EYDS 504 | ||
| + | gi|229484052_A/Canada-ON/RV152 EYDS 504 | ||
| + | gi|229892744_A/Mexico/InDRE411 EYDS 504 | ||
| + | gi|229484050_A/Mexico/InDRE448 EYDS 504 | ||
| + | gi|229396423_A/California/08/2 EYDS 498 | ||
| + | gi|229535987_A/South_Carolina/ EYDS 498 | ||
| + | gi|229536131_A/Colorado/03/200 EYDS 498 | ||
| + | gi|229892752_A/Canada-NS/RV153 EYDS 504 | ||
| + | gi|229536102_A/Nebraska/02/200 EYDS 498 | ||
| + | gi|229892742_A/Canada-NS/RV153 EYDS 504 | ||
| + | gi|229484048_A/Canada-NS/RV153 EYDS 504 | ||
| + | gi|237624329_A/swine/Alberta/O EYDS 504 | ||
| + | ** | ||
| + | </pre> | ||
| + | |||
| + | == BLAST == | ||
<pre> | <pre> | ||
Revision as of 19:05, 18 May 2009
home • H1N1 • PB2• PB1• PA • HA • NP • NA • MP • NS
Contents |
Structure
|
Sequence Polymorphisms
| Protein | Polymorphism | Strain with Polymorphism | Number of Strains with Polymorphism | |
| NP | G22D | 229598884_A/Texas/15/2009 | 1 | |
| NP | V35A | 237624329_A/swine/Alberta/O | 1 | |
| NP | S90N | 229536012_A/Arizona/01/2009 | 1 | |
| NP | V106I | 229892748_A/Canada-ON/RV152 | 28 | |
| NP | Q128L | 227977162_A/California/07/2 | 1 | |
| NP | L139I | 229783384_A/New_York/1669/2 | 2 | |
| NP | E198K | 237624329_A/swine/Alberta/O | 1 | |
| NP | N208D | 237624329_A/swine/Alberta/O | 1 | |
| NP | V223I | 229536102_A/Nebraska/02/200 | 2 | |
| NP | M228T | 237624329_A/swine/Alberta/O | 1 | |
| NP | A257T | 229396492_A/Ohio/07/2009 | 1 | |
| NP | V349I | 229536131_A/Colorado/03/200 | 2 | |
| NP | V358M | 229598873_A/Ohio/07/2009 | 1 | |
| NP | V369I | 229536077_A/Indiana/09/2009 | 1 | |
| NP | T379I | 229536102_A/Nebraska/02/200 | 18 | |
| NP | T379V | 229892752_A/Canada-NS/RV153 | 1 | |
| NP | D381N | 229396423_A/California/08/2 | 1 | |
| NP | D381Y | 237624329_A/swine/Alberta/O | 1 | |
| NP | T402A | 237511901_A/Mexico/4516/200 | 1 | |
| NP | S456N | 229536077_A/Indiana/09/2009 | 1 |
Multiple Sequence Alignment
H1N1 Swine Flu Multiple Sequence Alignment of NP Protein, 67 sequences
gi|229536005_A/Kansas/03/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229783384_A/New_York/1669/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536077_A/Indiana/09/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227831778_A/California/06/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227831761_A/California/05/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229462701_A/Valencia/GP4/20 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229462713_A/Pais_Vasco/GP20 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229462689_A/Castilla-La_Man ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536066_A/Texas/07/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536024_A/Minnesota/02/20 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536038_A/Arizona/02/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229783405_A/New_York/1682/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511891_A/Mexico/4486/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511915_A/Mexico/4108/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227977162_A/California/07/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536012_A/Arizona/01/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229598884_A/Texas/15/2009 ------MASQGTKRSYEQMETDGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229299508_A/Texas/05/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227831792_A/Texas/05/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229299528_A/Texas/04/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227831819_A/Texas/04/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227977106_A/California/04/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|227809832_A/California/04/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396465_A/Texas/06/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229462725_A/Castilla-La_Man ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535799_A/Texas/09/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535951_A/Texas/08/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535999_A/Kansas/02/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511917_A/Mexico/4115/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536057_A/New_York/20/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396355_A/New_York/12/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536051_A/New_York/20/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396481_A/New_York/19/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511911_A/Mexico/4482/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511913_A/Mexico/4603/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511895_A/Mexico/4604/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229783369_A/Korea/01/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535818_A/California/14/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535905_A/Massachusetts/0 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536096_A/Massachusetts/0 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536109_A/Michigan/02/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536123_A/New_York/13/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535786_A/New_York/22/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396367_A/New_York/06/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396437_A/New_York/10/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396377_A/New_York/11/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396453_A/New_York/15/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396393_A/New_York/18/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396417_A/New_York/23/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396406_A/New_York/31/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229598873_A/Ohio/07/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229396492_A/Ohio/07/2009 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|237511901_A/Mexico/4516/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229892750_A/Canada-AB/RV153 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229892746_A/Canada-ON/RV152 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229892748_A/Canada-ON/RV152 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229484052_A/Canada-ON/RV152 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229892744_A/Mexico/InDRE411 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229484050_A/Mexico/InDRE448 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229396423_A/California/08/2 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229535987_A/South_Carolina/ ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229536131_A/Colorado/03/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229892752_A/Canada-NS/RV153 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229536102_A/Nebraska/02/200 ------MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 44
gi|229892742_A/Canada-NS/RV153 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|229484048_A/Canada-NS/RV153 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMC 50
gi|237624329_A/swine/Alberta/O MSDIEAMASQGTKRSYEQMETGGERQDATEIRASAGRMIGGIGRFYIQMC 50
***************.************.***************
gi|229536005_A/Kansas/03/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229783384_A/New_York/1669/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536077_A/Indiana/09/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227831778_A/California/06/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227831761_A/California/05/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229462701_A/Valencia/GP4/20 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229462713_A/Pais_Vasco/GP20 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229462689_A/Castilla-La_Man TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536066_A/Texas/07/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536024_A/Minnesota/02/20 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536038_A/Arizona/02/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229783405_A/New_York/1682/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511891_A/Mexico/4486/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511915_A/Mexico/4108/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227977162_A/California/07/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536012_A/Arizona/01/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPNAGKDPKKTGG 94
gi|229598884_A/Texas/15/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229299508_A/Texas/05/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227831792_A/Texas/05/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229299528_A/Texas/04/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227831819_A/Texas/04/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227977106_A/California/04/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|227809832_A/California/04/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396465_A/Texas/06/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229462725_A/Castilla-La_Man TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535799_A/Texas/09/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535951_A/Texas/08/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535999_A/Kansas/02/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511917_A/Mexico/4115/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536057_A/New_York/20/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396355_A/New_York/12/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536051_A/New_York/20/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396481_A/New_York/19/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511911_A/Mexico/4482/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511913_A/Mexico/4603/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511895_A/Mexico/4604/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229783369_A/Korea/01/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535818_A/California/14/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535905_A/Massachusetts/0 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536096_A/Massachusetts/0 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536109_A/Michigan/02/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536123_A/New_York/13/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535786_A/New_York/22/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396367_A/New_York/06/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396437_A/New_York/10/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396377_A/New_York/11/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396453_A/New_York/15/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396393_A/New_York/18/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396417_A/New_York/23/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396406_A/New_York/31/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229598873_A/Ohio/07/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229396492_A/Ohio/07/2009 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|237511901_A/Mexico/4516/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229892750_A/Canada-AB/RV153 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229892746_A/Canada-ON/RV152 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229892748_A/Canada-ON/RV152 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229484052_A/Canada-ON/RV152 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229892744_A/Mexico/InDRE411 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229484050_A/Mexico/InDRE448 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229396423_A/California/08/2 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229535987_A/South_Carolina/ TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229536131_A/Colorado/03/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229892752_A/Canada-NS/RV153 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229536102_A/Nebraska/02/200 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 94
gi|229892742_A/Canada-NS/RV153 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|229484048_A/Canada-NS/RV153 TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
gi|237624329_A/swine/Alberta/O TELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGG 100
***************************************.**********
gi|229536005_A/Kansas/03/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGITHIMIWHSNLN 144
gi|229783384_A/New_York/1669/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGITHIMIWHSNLN 144
gi|229536077_A/Indiana/09/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227831778_A/California/06/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227831761_A/California/05/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229462701_A/Valencia/GP4/20 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229462713_A/Pais_Vasco/GP20 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229462689_A/Castilla-La_Man PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536066_A/Texas/07/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536024_A/Minnesota/02/20 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536038_A/Arizona/02/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229783405_A/New_York/1682/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511891_A/Mexico/4486/200 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511915_A/Mexico/4108/200 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227977162_A/California/07/2 PIYRRVDGKWMRELILYDKXEIRRVWRLANNGEDATAGLTHIMIWHSNLN 144
gi|229536012_A/Arizona/01/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229598884_A/Texas/15/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229299508_A/Texas/05/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227831792_A/Texas/05/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229299528_A/Texas/04/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227831819_A/Texas/04/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227977106_A/California/04/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|227809832_A/California/04/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396465_A/Texas/06/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229462725_A/Castilla-La_Man PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535799_A/Texas/09/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535951_A/Texas/08/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535999_A/Kansas/02/2009 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511917_A/Mexico/4115/200 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536057_A/New_York/20/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396355_A/New_York/12/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536051_A/New_York/20/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396481_A/New_York/19/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511911_A/Mexico/4482/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511913_A/Mexico/4603/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511895_A/Mexico/4604/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229783369_A/Korea/01/2009 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535818_A/California/14/2 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535905_A/Massachusetts/0 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536096_A/Massachusetts/0 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536109_A/Michigan/02/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536123_A/New_York/13/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535786_A/New_York/22/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396367_A/New_York/06/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396437_A/New_York/10/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396377_A/New_York/11/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396453_A/New_York/15/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396393_A/New_York/18/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396417_A/New_York/23/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396406_A/New_York/31/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229598873_A/Ohio/07/2009 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229396492_A/Ohio/07/2009 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|237511901_A/Mexico/4516/200 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229892750_A/Canada-AB/RV153 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229892746_A/Canada-ON/RV152 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229892748_A/Canada-ON/RV152 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229484052_A/Canada-ON/RV152 PIYRRIDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229892744_A/Mexico/InDRE411 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229484050_A/Mexico/InDRE448 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229396423_A/California/08/2 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229535987_A/South_Carolina/ PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229536131_A/Colorado/03/200 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229892752_A/Canada-NS/RV153 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229536102_A/Nebraska/02/200 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 144
gi|229892742_A/Canada-NS/RV153 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|229484048_A/Canada-NS/RV153 PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
gi|237624329_A/swine/Alberta/O PIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLN 150
*****:************* ******* **********:***********
gi|229536005_A/Kansas/03/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229783384_A/New_York/1669/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536077_A/Indiana/09/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227831778_A/California/06/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227831761_A/California/05/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229462701_A/Valencia/GP4/20 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229462713_A/Pais_Vasco/GP20 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229462689_A/Castilla-La_Man DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536066_A/Texas/07/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536024_A/Minnesota/02/20 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536038_A/Arizona/02/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229783405_A/New_York/1682/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511891_A/Mexico/4486/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511915_A/Mexico/4108/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227977162_A/California/07/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536012_A/Arizona/01/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229598884_A/Texas/15/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229299508_A/Texas/05/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227831792_A/Texas/05/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229299528_A/Texas/04/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227831819_A/Texas/04/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227977106_A/California/04/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|227809832_A/California/04/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396465_A/Texas/06/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229462725_A/Castilla-La_Man DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535799_A/Texas/09/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535951_A/Texas/08/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535999_A/Kansas/02/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511917_A/Mexico/4115/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536057_A/New_York/20/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396355_A/New_York/12/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536051_A/New_York/20/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396481_A/New_York/19/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511911_A/Mexico/4482/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511913_A/Mexico/4603/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511895_A/Mexico/4604/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229783369_A/Korea/01/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535818_A/California/14/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535905_A/Massachusetts/0 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536096_A/Massachusetts/0 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536109_A/Michigan/02/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536123_A/New_York/13/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535786_A/New_York/22/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396367_A/New_York/06/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396437_A/New_York/10/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396377_A/New_York/11/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396453_A/New_York/15/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396393_A/New_York/18/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396417_A/New_York/23/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396406_A/New_York/31/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229598873_A/Ohio/07/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229396492_A/Ohio/07/2009 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|237511901_A/Mexico/4516/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229892750_A/Canada-AB/RV153 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229892746_A/Canada-ON/RV152 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229892748_A/Canada-ON/RV152 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229484052_A/Canada-ON/RV152 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229892744_A/Mexico/InDRE411 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229484050_A/Mexico/InDRE448 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229396423_A/California/08/2 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229535987_A/South_Carolina/ DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229536131_A/Colorado/03/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229892752_A/Canada-NS/RV153 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229536102_A/Nebraska/02/200 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 194
gi|229892742_A/Canada-NS/RV153 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|229484048_A/Canada-NS/RV153 DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELI 200
gi|237624329_A/swine/Alberta/O DATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMKLI 200
***********************************************:**
gi|229536005_A/Kansas/03/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229783384_A/New_York/1669/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536077_A/Indiana/09/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227831778_A/California/06/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227831761_A/California/05/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229462701_A/Valencia/GP4/20 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229462713_A/Pais_Vasco/GP20 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229462689_A/Castilla-La_Man RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536066_A/Texas/07/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536024_A/Minnesota/02/20 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536038_A/Arizona/02/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229783405_A/New_York/1682/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511891_A/Mexico/4486/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511915_A/Mexico/4108/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227977162_A/California/07/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536012_A/Arizona/01/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229598884_A/Texas/15/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229299508_A/Texas/05/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227831792_A/Texas/05/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229299528_A/Texas/04/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227831819_A/Texas/04/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227977106_A/California/04/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|227809832_A/California/04/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396465_A/Texas/06/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229462725_A/Castilla-La_Man RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535799_A/Texas/09/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535951_A/Texas/08/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535999_A/Kansas/02/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511917_A/Mexico/4115/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536057_A/New_York/20/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396355_A/New_York/12/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536051_A/New_York/20/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396481_A/New_York/19/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511911_A/Mexico/4482/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511913_A/Mexico/4603/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511895_A/Mexico/4604/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229783369_A/Korea/01/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535818_A/California/14/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535905_A/Massachusetts/0 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536096_A/Massachusetts/0 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536109_A/Michigan/02/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536123_A/New_York/13/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535786_A/New_York/22/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396367_A/New_York/06/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396437_A/New_York/10/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396377_A/New_York/11/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396453_A/New_York/15/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396393_A/New_York/18/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396417_A/New_York/23/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396406_A/New_York/31/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229598873_A/Ohio/07/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229396492_A/Ohio/07/2009 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|237511901_A/Mexico/4516/200 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229892750_A/Canada-AB/RV153 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229892746_A/Canada-ON/RV152 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229892748_A/Canada-ON/RV152 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229484052_A/Canada-ON/RV152 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229892744_A/Mexico/InDRE411 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229484050_A/Mexico/InDRE448 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229396423_A/California/08/2 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229535987_A/South_Carolina/ RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229536131_A/Colorado/03/200 RMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229892752_A/Canada-NS/RV153 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229536102_A/Nebraska/02/200 RMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMDQVRE 244
gi|229892742_A/Canada-NS/RV153 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|229484048_A/Canada-NS/RV153 RMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRE 250
gi|237624329_A/swine/Alberta/O RMIKRGIDDRNFWRGENGRRTRVAYERTCNILKGKFQTAAQRAMMDQVRE 250
*******:**************:**** **********************
gi|229536005_A/Kansas/03/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229783384_A/New_York/1669/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536077_A/Indiana/09/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227831778_A/California/06/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227831761_A/California/05/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229462701_A/Valencia/GP4/20 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229462713_A/Pais_Vasco/GP20 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229462689_A/Castilla-La_Man SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536066_A/Texas/07/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536024_A/Minnesota/02/20 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536038_A/Arizona/02/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229783405_A/New_York/1682/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511891_A/Mexico/4486/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511915_A/Mexico/4108/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227977162_A/California/07/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536012_A/Arizona/01/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229598884_A/Texas/15/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229299508_A/Texas/05/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227831792_A/Texas/05/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229299528_A/Texas/04/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227831819_A/Texas/04/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227977106_A/California/04/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|227809832_A/California/04/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396465_A/Texas/06/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229462725_A/Castilla-La_Man SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535799_A/Texas/09/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535951_A/Texas/08/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535999_A/Kansas/02/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511917_A/Mexico/4115/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536057_A/New_York/20/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396355_A/New_York/12/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536051_A/New_York/20/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396481_A/New_York/19/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511911_A/Mexico/4482/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511913_A/Mexico/4603/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511895_A/Mexico/4604/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229783369_A/Korea/01/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535818_A/California/14/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535905_A/Massachusetts/0 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536096_A/Massachusetts/0 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536109_A/Michigan/02/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536123_A/New_York/13/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535786_A/New_York/22/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396367_A/New_York/06/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396437_A/New_York/10/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396377_A/New_York/11/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396453_A/New_York/15/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396393_A/New_York/18/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396417_A/New_York/23/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396406_A/New_York/31/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229598873_A/Ohio/07/2009 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229396492_A/Ohio/07/2009 SRNPGNTEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|237511901_A/Mexico/4516/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229892750_A/Canada-AB/RV153 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229892746_A/Canada-ON/RV152 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229892748_A/Canada-ON/RV152 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229484052_A/Canada-ON/RV152 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229892744_A/Mexico/InDRE411 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229484050_A/Mexico/InDRE448 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229396423_A/California/08/2 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229535987_A/South_Carolina/ SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229536131_A/Colorado/03/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229892752_A/Canada-NS/RV153 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229536102_A/Nebraska/02/200 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 294
gi|229892742_A/Canada-NS/RV153 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|229484048_A/Canada-NS/RV153 SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
gi|237624329_A/swine/Alberta/O SRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
******:*******************************************
gi|229536005_A/Kansas/03/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229783384_A/New_York/1669/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536077_A/Indiana/09/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227831778_A/California/06/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227831761_A/California/05/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229462701_A/Valencia/GP4/20 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229462713_A/Pais_Vasco/GP20 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229462689_A/Castilla-La_Man GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536066_A/Texas/07/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536024_A/Minnesota/02/20 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536038_A/Arizona/02/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229783405_A/New_York/1682/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511891_A/Mexico/4486/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511915_A/Mexico/4108/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227977162_A/California/07/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536012_A/Arizona/01/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229598884_A/Texas/15/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229299508_A/Texas/05/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227831792_A/Texas/05/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229299528_A/Texas/04/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227831819_A/Texas/04/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227977106_A/California/04/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|227809832_A/California/04/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396465_A/Texas/06/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229462725_A/Castilla-La_Man GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535799_A/Texas/09/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535951_A/Texas/08/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535999_A/Kansas/02/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511917_A/Mexico/4115/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536057_A/New_York/20/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396355_A/New_York/12/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536051_A/New_York/20/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396481_A/New_York/19/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511911_A/Mexico/4482/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511913_A/Mexico/4603/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511895_A/Mexico/4604/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229783369_A/Korea/01/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535818_A/California/14/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535905_A/Massachusetts/0 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536096_A/Massachusetts/0 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536109_A/Michigan/02/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229536123_A/New_York/13/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535786_A/New_York/22/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396367_A/New_York/06/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396437_A/New_York/10/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396377_A/New_York/11/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396453_A/New_York/15/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396393_A/New_York/18/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396417_A/New_York/23/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396406_A/New_York/31/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229598873_A/Ohio/07/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229396492_A/Ohio/07/2009 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|237511901_A/Mexico/4516/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229892750_A/Canada-AB/RV153 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229892746_A/Canada-ON/RV152 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229892748_A/Canada-ON/RV152 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229484052_A/Canada-ON/RV152 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229892744_A/Mexico/InDRE411 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229484050_A/Mexico/InDRE448 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229396423_A/California/08/2 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229535987_A/South_Carolina/ GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRIS 344
gi|229536131_A/Colorado/03/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRIS 344
gi|229892752_A/Canada-NS/RV153 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229536102_A/Nebraska/02/200 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 344
gi|229892742_A/Canada-NS/RV153 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|229484048_A/Canada-NS/RV153 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
gi|237624329_A/swine/Alberta/O GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVS 350
************************************************:*
gi|229536005_A/Kansas/03/2009 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229783384_A/New_York/1669/2 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229536077_A/Indiana/09/2009 SFIRGKKVIPRGKLSTRGIQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|227831778_A/California/06/2 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|227831761_A/California/05/2 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229462701_A/Valencia/GP4/20 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229462713_A/Pais_Vasco/GP20 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229462689_A/Castilla-La_Man SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229536066_A/Texas/07/2009 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229536024_A/Minnesota/02/20 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229536038_A/Arizona/02/2009 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229783405_A/New_York/1682/2 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|237511891_A/Mexico/4486/200 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|237511915_A/Mexico/4108/200 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|227977162_A/California/07/2 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536012_A/Arizona/01/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229598884_A/Texas/15/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229299508_A/Texas/05/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|227831792_A/Texas/05/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229299528_A/Texas/04/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|227831819_A/Texas/04/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|227977106_A/California/04/2 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|227809832_A/California/04/2 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396465_A/Texas/06/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229462725_A/Castilla-La_Man SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229535799_A/Texas/09/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229535951_A/Texas/08/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229535999_A/Kansas/02/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|237511917_A/Mexico/4115/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536057_A/New_York/20/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396355_A/New_York/12/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536051_A/New_York/20/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396481_A/New_York/19/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|237511911_A/Mexico/4482/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|237511913_A/Mexico/4603/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|237511895_A/Mexico/4604/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229783369_A/Korea/01/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229535818_A/California/14/2 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229535905_A/Massachusetts/0 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536096_A/Massachusetts/0 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536109_A/Michigan/02/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536123_A/New_York/13/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229535786_A/New_York/22/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396367_A/New_York/06/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396437_A/New_York/10/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396377_A/New_York/11/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396453_A/New_York/15/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396393_A/New_York/18/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396417_A/New_York/23/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396406_A/New_York/31/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229598873_A/Ohio/07/2009 SFIRGKKMIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229396492_A/Ohio/07/2009 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|237511901_A/Mexico/4516/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229892750_A/Canada-AB/RV153 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400
gi|229892746_A/Canada-ON/RV152 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400
gi|229892748_A/Canada-ON/RV152 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400
gi|229484052_A/Canada-ON/RV152 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400
gi|229892744_A/Mexico/InDRE411 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400
gi|229484050_A/Mexico/InDRE448 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 400
gi|229396423_A/California/08/2 SFIRGKKVIPRGKLSTRGVQIASNENVETMNSNTLELRSRYWAIRTRSGG 394
gi|229535987_A/South_Carolina/ SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229536131_A/Colorado/03/200 SFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGG 394
gi|229892752_A/Canada-NS/RV153 SFIRGKKVIPRGKLSTRGVQIASNENVEVMDSNTLELRSRYWAIRTRSGG 400
gi|229536102_A/Nebraska/02/200 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 394
gi|229892742_A/Canada-NS/RV153 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 400
gi|229484048_A/Canada-NS/RV153 SFIRGKKVIPRGKLSTRGVQIASNENVEIMDSNTLELRSRYWAIRTRSGG 400
gi|237624329_A/swine/Alberta/O SFIRGKKVIPRGKLSTRGVQIASNENVEIMYSNTLELRSRYWAIRTRSGG 400
*******:**********:********* * *******************
gi|229536005_A/Kansas/03/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229783384_A/New_York/1669/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536077_A/Indiana/09/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227831778_A/California/06/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227831761_A/California/05/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229462701_A/Valencia/GP4/20 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229462713_A/Pais_Vasco/GP20 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229462689_A/Castilla-La_Man NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536066_A/Texas/07/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536024_A/Minnesota/02/20 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536038_A/Arizona/02/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229783405_A/New_York/1682/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511891_A/Mexico/4486/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511915_A/Mexico/4108/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227977162_A/California/07/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536012_A/Arizona/01/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229598884_A/Texas/15/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229299508_A/Texas/05/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227831792_A/Texas/05/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229299528_A/Texas/04/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227831819_A/Texas/04/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227977106_A/California/04/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|227809832_A/California/04/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396465_A/Texas/06/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229462725_A/Castilla-La_Man NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535799_A/Texas/09/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535951_A/Texas/08/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535999_A/Kansas/02/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511917_A/Mexico/4115/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536057_A/New_York/20/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396355_A/New_York/12/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536051_A/New_York/20/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396481_A/New_York/19/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511911_A/Mexico/4482/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511913_A/Mexico/4603/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511895_A/Mexico/4604/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229783369_A/Korea/01/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535818_A/California/14/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535905_A/Massachusetts/0 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536096_A/Massachusetts/0 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536109_A/Michigan/02/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536123_A/New_York/13/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535786_A/New_York/22/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396367_A/New_York/06/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396437_A/New_York/10/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396377_A/New_York/11/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396453_A/New_York/15/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396393_A/New_York/18/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396417_A/New_York/23/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396406_A/New_York/31/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229598873_A/Ohio/07/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229396492_A/Ohio/07/2009 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|237511901_A/Mexico/4516/200 NANQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229892750_A/Canada-AB/RV153 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229892746_A/Canada-ON/RV152 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229892748_A/Canada-ON/RV152 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229484052_A/Canada-ON/RV152 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229892744_A/Mexico/InDRE411 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229484050_A/Mexico/InDRE448 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229396423_A/California/08/2 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229535987_A/South_Carolina/ NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229536131_A/Colorado/03/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229892752_A/Canada-NS/RV153 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229536102_A/Nebraska/02/200 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 444
gi|229892742_A/Canada-NS/RV153 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|229484048_A/Canada-NS/RV153 NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
gi|237624329_A/swine/Alberta/O NTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEV 450
*:************************************************
gi|229536005_A/Kansas/03/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229783384_A/New_York/1669/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536077_A/Indiana/09/2009 IRMMENAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227831778_A/California/06/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227831761_A/California/05/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229462701_A/Valencia/GP4/20 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229462713_A/Pais_Vasco/GP20 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229462689_A/Castilla-La_Man IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536066_A/Texas/07/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536024_A/Minnesota/02/20 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536038_A/Arizona/02/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229783405_A/New_York/1682/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511891_A/Mexico/4486/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511915_A/Mexico/4108/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227977162_A/California/07/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536012_A/Arizona/01/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229598884_A/Texas/15/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229299508_A/Texas/05/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227831792_A/Texas/05/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229299528_A/Texas/04/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227831819_A/Texas/04/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227977106_A/California/04/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|227809832_A/California/04/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396465_A/Texas/06/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229462725_A/Castilla-La_Man IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535799_A/Texas/09/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535951_A/Texas/08/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535999_A/Kansas/02/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511917_A/Mexico/4115/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536057_A/New_York/20/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396355_A/New_York/12/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536051_A/New_York/20/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396481_A/New_York/19/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511911_A/Mexico/4482/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511913_A/Mexico/4603/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511895_A/Mexico/4604/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229783369_A/Korea/01/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535818_A/California/14/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535905_A/Massachusetts/0 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536096_A/Massachusetts/0 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536109_A/Michigan/02/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536123_A/New_York/13/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535786_A/New_York/22/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396367_A/New_York/06/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396437_A/New_York/10/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396377_A/New_York/11/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396453_A/New_York/15/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396393_A/New_York/18/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396417_A/New_York/23/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396406_A/New_York/31/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229598873_A/Ohio/07/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229396492_A/Ohio/07/2009 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|237511901_A/Mexico/4516/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229892750_A/Canada-AB/RV153 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229892746_A/Canada-ON/RV152 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229892748_A/Canada-ON/RV152 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229484052_A/Canada-ON/RV152 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229892744_A/Mexico/InDRE411 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229484050_A/Mexico/InDRE448 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229396423_A/California/08/2 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229535987_A/South_Carolina/ IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229536131_A/Colorado/03/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229892752_A/Canada-NS/RV153 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229536102_A/Nebraska/02/200 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 494
gi|229892742_A/Canada-NS/RV153 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|229484048_A/Canada-NS/RV153 IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
gi|237624329_A/swine/Alberta/O IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAE 500
*****.********************************************
gi|229536005_A/Kansas/03/2009 EYDS 498
gi|229783384_A/New_York/1669/2 EYDS 498
gi|229536077_A/Indiana/09/2009 EYDS 498
gi|227831778_A/California/06/2 EYDS 498
gi|227831761_A/California/05/2 EYDS 498
gi|229462701_A/Valencia/GP4/20 EYDS 498
gi|229462713_A/Pais_Vasco/GP20 EYDS 498
gi|229462689_A/Castilla-La_Man EYDS 498
gi|229536066_A/Texas/07/2009 EYDS 498
gi|229536024_A/Minnesota/02/20 EYDS 498
gi|229536038_A/Arizona/02/2009 EYDS 498
gi|229783405_A/New_York/1682/2 EYDS 498
gi|237511891_A/Mexico/4486/200 EYDS 498
gi|237511915_A/Mexico/4108/200 EYDS 498
gi|227977162_A/California/07/2 EYDS 498
gi|229536012_A/Arizona/01/2009 EYDS 498
gi|229598884_A/Texas/15/2009 EYDS 498
gi|229299508_A/Texas/05/2009 EYDS 498
gi|227831792_A/Texas/05/2009 EYDS 498
gi|229299528_A/Texas/04/2009 EYDS 498
gi|227831819_A/Texas/04/2009 EYDS 498
gi|227977106_A/California/04/2 EYDS 498
gi|227809832_A/California/04/2 EYDS 498
gi|229396465_A/Texas/06/2009 EYDS 498
gi|229462725_A/Castilla-La_Man EYDS 498
gi|229535799_A/Texas/09/2009 EYDS 498
gi|229535951_A/Texas/08/2009 EYDS 498
gi|229535999_A/Kansas/02/2009 EYDS 498
gi|237511917_A/Mexico/4115/200 EYDS 498
gi|229536057_A/New_York/20/200 EYDS 498
gi|229396355_A/New_York/12/200 EY-- 496
gi|229536051_A/New_York/20/200 EYDS 498
gi|229396481_A/New_York/19/200 EYDS 498
gi|237511911_A/Mexico/4482/200 EYDS 498
gi|237511913_A/Mexico/4603/200 EYDS 498
gi|237511895_A/Mexico/4604/200 EYDS 498
gi|229783369_A/Korea/01/2009 EYDS 498
gi|229535818_A/California/14/2 EYDS 498
gi|229535905_A/Massachusetts/0 EYDS 498
gi|229536096_A/Massachusetts/0 EYDS 498
gi|229536109_A/Michigan/02/200 EYDS 498
gi|229536123_A/New_York/13/200 EYDS 498
gi|229535786_A/New_York/22/200 EYDS 498
gi|229396367_A/New_York/06/200 EYDS 498
gi|229396437_A/New_York/10/200 EYDS 498
gi|229396377_A/New_York/11/200 EYDS 498
gi|229396453_A/New_York/15/200 EYDS 498
gi|229396393_A/New_York/18/200 EYDS 498
gi|229396417_A/New_York/23/200 EYDS 498
gi|229396406_A/New_York/31/200 EYDS 498
gi|229598873_A/Ohio/07/2009 EYDS 498
gi|229396492_A/Ohio/07/2009 EYDS 498
gi|237511901_A/Mexico/4516/200 EYDS 498
gi|229892750_A/Canada-AB/RV153 EYDS 504
gi|229892746_A/Canada-ON/RV152 EYDS 504
gi|229892748_A/Canada-ON/RV152 EYDS 504
gi|229484052_A/Canada-ON/RV152 EYDS 504
gi|229892744_A/Mexico/InDRE411 EYDS 504
gi|229484050_A/Mexico/InDRE448 EYDS 504
gi|229396423_A/California/08/2 EYDS 498
gi|229535987_A/South_Carolina/ EYDS 498
gi|229536131_A/Colorado/03/200 EYDS 498
gi|229892752_A/Canada-NS/RV153 EYDS 504
gi|229536102_A/Nebraska/02/200 EYDS 498
gi|229892742_A/Canada-NS/RV153 EYDS 504
gi|229484048_A/Canada-NS/RV153 EYDS 504
gi|237624329_A/swine/Alberta/O EYDS 504
**
BLAST
>gb|ABA27433.1| nucleoprotein [Influenza A virus (A/swine/MI/PU243/04 (H3N1))]
gb|ABF17978.1| nucleoprotein [Influenza A virus (A/Ontario/RV1273/2005(H3N2))]
gb|ABF17979.1| nucleoprotein [Influenza A virus (A/swine/Alberta/14722/2005(H3N2))]
6 more sequence titles
gb|ABF17980.1| nucleoprotein [Influenza A virus (A/swine/British Columbia/28103/2005(H3N2))]
gb|ABF17981.1| nucleoprotein [Influenza A virus (A/swine/Manitoba/12707/2005(H3N2))]
gb|ABF17982.1| nucleoprotein [Influenza A virus (A/swine/Ontario/33853/2005(H3N2))]
gb|ABF17983.1| nucleoprotein [Influenza A virus (A/turkey/Ontario/31232/2005(H3N2))]
gb|ABY70960.1| nucleoprotein [Influenza A virus (A/Ontario/1252/2007(H3N2))]
gb|ACF04394.1| nucleocapsid protein [Influenza A virus (A/swine/Quebec/4001/2005(H3N2))]
Length=504
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/504 (98%), Positives = 502/504 (99%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVG+MIGGIG+FYIQMCTELKLSDY+G
Sbjct 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGKMIGGIGKFYIQMCTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE
Sbjct 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR
Sbjct 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA
Sbjct 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE
Sbjct 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVGIDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP
Sbjct 301 GYSLVGIDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGKLSTRGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV
Sbjct 361 RGKLSTRGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QRNLPFERATVMAAFSGNNEGRTSDMRTEVI+MMESAKPEDLSFQGRGVFELSDEKAT+P
Sbjct 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIKMMESAKPEDLSFQGRGVFELSDEKATSP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
>gb|ABY81789.2| nucleoprotein [Influenza A virus (A/swine/Korea/JNS06/2004(H3N2))]
Length=504
Score = 1037 bits (2681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/504 (98%), Positives = 502/504 (99%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIEAMA+QGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+G
Sbjct 1 MSDIEAMATQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE
Sbjct 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR
Sbjct 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR AYERMCNILKGKFQTAA
Sbjct 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRTAYERMCNILKGKFQTAA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE
Sbjct 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVGIDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP
Sbjct 301 GYSLVGIDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV
Sbjct 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QR+LPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+P
Sbjct 421 QRSLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
>gb|AAL87891.1|AF455701_1 nucleoprotein [Influenza A virus (A/Swine/North Carolina/93523/01
(H1N2))]
Length=504
Score = 1036 bits (2680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/504 (98%), Positives = 501/504 (99%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+G
Sbjct 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE
Sbjct 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR
Sbjct 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR AYERMCNILKGKFQTAA
Sbjct 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRTAYERMCNILKGKFQTAA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE
Sbjct 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVGIDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP
Sbjct 301 GYSLVGIDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGKLSTRGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV
Sbjct 361 RGKLSTRGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QRNLPFERATV+AAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+P
Sbjct 421 QRNLPFERATVLAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
>gb|ACF04386.1| nucleocapsid protein [Influenza A virus (A/mink/Nova Scotia/1055488/2007(H3N2))]
Length=504
Score = 1036 bits (2679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/504 (98%), Positives = 502/504 (99%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVG+MIGGIG+FYIQMCTELKLSDY+G
Sbjct 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGKMIGGIGKFYIQMCTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE
Sbjct 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR
Sbjct 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA
Sbjct 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE
Sbjct 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVGIDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP
Sbjct 301 GYSLVGIDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGKLSTRGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV
Sbjct 361 RGKLSTRGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QRNLPFER+TVMAAFSGNNEGRTSDMRTEVI+MMESAKPEDLSFQGRGVFELSDEKAT+P
Sbjct 421 QRNLPFERSTVMAAFSGNNEGRTSDMRTEVIKMMESAKPEDLSFQGRGVFELSDEKATSP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
>gb|AAL87892.1|AF455702_1 nucleoprotein [Influenza A virus (A/Swine/Minnesota/55551/00
(H1N2))]
Length=504
Score = 1034 bits (2673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/504 (98%), Positives = 500/504 (99%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIEAMASQGTKRSYEQMETGGERQD TEIRASVGRMIGGIGRFYIQMCTELKLSDY+G
Sbjct 1 MSDIEAMASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE
Sbjct 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR
Sbjct 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAA
Sbjct 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE
Sbjct 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVGIDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP
Sbjct 301 GYSLVGIDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGKLSTRGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV
Sbjct 361 RGKLSTRGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF+GRGVFELSDEKAT+P
Sbjct 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFKGRGVFELSDEKATSP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDMSNEGSYFF DNAEEYDS
Sbjct 481 IVPSFDMSNEGSYFFEDNAEEYDS 504
>gb|ABG34256.1| nucleoprotein [Influenza A virus (A/swine/Korea/S11/2005(H1N2))]
Length=504
Score = 1033 bits (2672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/504 (97%), Positives = 501/504 (99%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FY+QMCTELKLSDY+G
Sbjct 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYVQMCTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE
Sbjct 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR
Sbjct 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKGVGT+AMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAA
Sbjct 181 RSGAAGAAVKGVGTVAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
QRAMMDQVRESRNPGNAEIEDLIFLAR+ALILRGSVAHKSCLPACVYGLAVASGHDFERE
Sbjct 241 QRAMMDQVRESRNPGNAEIEDLIFLARTALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVGIDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP
Sbjct 301 GYSLVGIDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGKLSTRGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNT+QQK SAGQISVQPTFSV
Sbjct 361 RGKLSTRGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTSQQKTSAGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+P
Sbjct 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
>gb|AAL87895.1|AF455705_1 nucleoprotein [Influenza A virus (A/Swine/Illinois/100085A/01
(H1N2))]
Length=504
Score = 1033 bits (2672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/504 (98%), Positives = 500/504 (99%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+G
Sbjct 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE
Sbjct 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR
Sbjct 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENG RTR+AYERMCNILKGKFQTAA
Sbjct 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGPRTRIAYERMCNILKGKFQTAA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE
Sbjct 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVGIDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP
Sbjct 301 GYSLVGIDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGKLSTRGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV
Sbjct 361 RGKLSTRGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKA +P
Sbjct 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAASP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
>gb|ACP44183.1| nucleocapsid protein [Influenza A virus (A/California/07/2009(H1N1))]
Length=498
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/498 (99%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDK EIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKXEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
R ANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RLANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ABA27441.1| nucleoprotein [Influenza A virus (A/swine/IN/PU542/04 (H3N1))]
Length=504
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/504 (98%), Positives = 501/504 (99%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+G
Sbjct 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERMVLSAFDERRNKYLE+HP+AGKDPKKTGGPIYRRVDGKWMRELILYDKE
Sbjct 61 RLIQNSITIERMVLSAFDERRNKYLEDHPNAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR
Sbjct 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAA
Sbjct 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE
Sbjct 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVGIDPFKLLQNSQV S +RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP
Sbjct 301 GYSLVGIDPFKLLQNSQVFSXIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGKLSTRGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV
Sbjct 361 RGKLSTRGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+P
Sbjct 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
>gb|ACH69553.1| nucleocapsid protein [Influenza A virus (A/swine/OH/511445/2007(H1N1))]
Length=504
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/504 (97%), Positives = 501/504 (99%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+G
Sbjct 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRR+DGKWMRELILYDKE
Sbjct 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKWMRELILYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRR+WRQANNG+DATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR
Sbjct 121 EIRRIWRQANNGDDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKGVGTI MELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAA
Sbjct 181 RSGAAGAAVKGVGTITMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE
Sbjct 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVGIDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP
Sbjct 301 GYSLVGIDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGKLSTRGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV
Sbjct 361 RGKLSTRGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QRNLPFERATVMAAFSGNNEGRTSDMRTE+IRMME+AKPEDLSFQGRGVFELSDEKAT+P
Sbjct 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEIIRMMENAKPEDLSFQGRGVFELSDEKATSP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
>gb|ABG34249.1| nucleoprotein [Influenza A virus (A/swine/Korea/S5/2005(H1N2))]
gb|ABG34265.1| nucleoprotein [Influenza A virus (A/swine/Korea/S15/2006(H1N2))]
Length=504
Score = 1029 bits (2661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/504 (97%), Positives = 500/504 (99%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FY+QMCTELKLSDY+G
Sbjct 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYVQMCTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKW+RELILYDKE
Sbjct 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWIRELILYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR
Sbjct 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKGVGT+AMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAA
Sbjct 181 RSGAAGAAVKGVGTVAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVA KSCLPACVYGLAVASGHDFERE
Sbjct 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVARKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVGIDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP
Sbjct 301 GYSLVGIDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGKLSTRGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNT+QQK SAGQISVQPTFSV
Sbjct 361 RGKLSTRGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTSQQKTSAGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+P
Sbjct 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
>gb|ACF25041.1| nucleocapsid protein [Influenza A virus (A/chicken/NY/21665-73/1998(H1N1))]
Length=498
Score = 1028 bits (2659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/498 (98%), Positives = 497/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
+DPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 VDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVETMDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVETMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|AAF73885.1|AF222775_1 nucleoprotein [Influenza A virus (A/Swine/Wisconsin/238/97(H1N1))]
Length=498
Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/498 (98%), Positives = 497/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNEN+ETMDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENIETMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|AAG01771.1|AF251415_1 nucleoprotein [Influenza A virus (A/Swine/Iowa/533/99 (H3N2))]
Length=498
Score = 1026 bits (2654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ACI48765.1| nucleocapsid protein [Influenza A virus (A/swine/Shanghai/1/2007(H1N2))]
Length=498
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMME+AKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMENAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ACE78008.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/CAS08/2005(H1N1))]
Length=498
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ABR87894.1| nucleoprotein [Influenza A virus (A/swine/Guangxi/13/2006(H1N2))]
Length=498
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
E+ATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 EKATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ABQ41899.1| nucleoprotein [Influenza A virus (A/swine/North Carolina/2003(H3N2))]
Length=498
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/498 (98%), Positives = 497/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNE+PAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNEDPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVI+MMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIKMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|AAA51481.1| nucleoprotein [Influenza A virus (A/swine/Nebraska/1/1992(H1N1))]
Length=498
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|ACE78024.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/CY07/2007(H3N2))]
gb|ACE78026.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/CY10/2007(H3N2))]
Length=498
Score = 1025 bits (2651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/498 (98%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MA+QGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MATQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRTAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>sp|P68042.1|NCAP_I88A5 RecName: Full=Nucleoprotein; AltName: Full=Nucleocapsid protein;
Short=Protein N
sp|P68043.1|NCAP_I88A7 RecName: Full=Nucleoprotein; AltName: Full=Nucleocapsid protein;
Short=Protein N
gb|AAA52254.1| nucleoprotein [Influenza A virus (A/Wisconsin/3523/1988(H1N1))]
gb|AAA52267.1| nucleoprotein [Influenza A virus (A/swine/Iowa/17672/1988(H1N1))]
gb|ABR29599.1| nucleocapsid protein [Influenza A virus (A/swine/Iowa/17672/1988(H1N1))]
gb|ABY84688.1| nucleocapsid protein [Influenza A virus (A/swine/California/T9001707/1991(H1N1))]
gb|ACF25600.1| nucleocapsid protein [Influenza A virus (A/turkey/IA/21089-3/1992(H1N1))]
gb|ACI26608.1| nucleocapsid protein [Influenza A virus (A/swine/Memphis/1/1990(H1N1))]
Length=498
Score = 1025 bits (2651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|ACF17150.1| nucleocapsid protein [Influenza A virus (A/swine/Hainan/1/2005(H1N2))]
Length=498
Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSD++GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDHEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ACE78018.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/CAS05/2004(H3N2))]
Length=498
Score = 1025 bits (2649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/498 (98%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MA+QGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MATQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKG+GTIAMELIRMIKRGINDRNFWRGENGRRTR AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGIGTIAMELIRMIKRGINDRNFWRGENGRRTRTAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ABU80404.1| nucleocapsid protein [Influenza A virus (A/Ohio/3559/1988(H1N1))]
Length=498
Score = 1025 bits (2649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RG+QIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGIQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|ABS50125.1| nucleocapsid protein [Influenza A virus (A/swine/Iowa/31483/1988(H1N1))]
Length=498
Score = 1025 bits (2649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|AAB50974.1| nucleoprotein [Influenza A virus (A/swine/Beijing/94/1991(H1N1))]
gb|ABR29569.1| nucleocapsid protein [Influenza A virus (A/swine/Maryland/23239/1991(H1N1))]
Length=498
Score = 1025 bits (2649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLR+SSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRISSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|ABC59712.1| nucleoprotein [Influenza A virus (A/turkey/Ohio/313053/04(H3N2))]
gb|ACD88663.1| nucleocapsid protein [Influenza A virus (A/turkey/OH/313053/2004(H3N2))]
Length=498
Score = 1025 bits (2649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVG+MIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGKMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVI+MMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIKMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ACE78022.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/CY04/2007(H3N2))]
gb|ACE78023.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/CY05/2007(H3N2))]
gb|ACE78025.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/CY09/2007(H3N2))]
Length=498
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/498 (98%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANN EDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNSEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRTAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ACE78007.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/CAN01/2004(H1N1))]
Length=498
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRV+GKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVNGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ACD88652.1| nucleocapsid protein [Influenza A virus (A/turkey/NC/353568/2005(H3N2))]
Length=498
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVG+MIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGKMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVI+MMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIKMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ABW71525.1| nucleocapsid protein [Influenza A virus (A/swine/Iowa/24297/1991(H1N1))]
Length=498
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVI+MMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIKMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|AAA51491.1| nucleoprotein [Influenza A virus (A/MD/12/1991(H1N1))]
Length=498
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/498 (98%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMA FSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAVFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|AAL87889.1|AF455699_1 nucleoprotein [Influenza A virus (A/Swine/Ohio/891/01(H1N2))]
gb|AAL87896.1|AF455706_1 nucleoprotein [Influenza A virus (A/Swine/Illinois/100084/01
(H1N2))]
Length=498
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/498 (98%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKA +PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAASPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|AAF73886.1|AF222776_1 nucleoprotein [Influenza A virus (A/Swine/Wisconsin/457/98(H1N1))]
gb|AAF73887.1|AF222777_1 nucleoprotein [Influenza A virus (A/Swine/Wisconsin/458/98(H1N1))]
gb|AAF73888.1|AF222778_1 nucleoprotein [Influenza A virus (A/Swine/Wisconsin/464/98(H1N1))]
Length=498
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MA+QGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MATQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTA+QRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTASQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERAT+MAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATIMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ACE78019.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/CAN04/2005(H3N2))]
gb|ACE78021.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/CAS09/2006(H3N2))]
Length=498
Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/498 (98%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQT AQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTTAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQ+ASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQRASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ACF25610.1| nucleocapsid protein [Influenza A virus (A/turkey/IA/10271-3/1990(H1N1))]
Length=498
Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRE+ILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMREIILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENV+ MDSNTLELRSRYWAIRTRSGGNTNQQ+ASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVDAMDSNTLELRSRYWAIRTRSGGNTNQQRASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|ACF25547.1| nucleocapsid protein [Influenza A virus (A/turkey/MN/366767/2005(H3N2))]
Length=498
Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/498 (98%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
+TIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 MTIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATV+AAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVLAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ACD88707.1| nucleocapsid protein [Influenza A virus (A/turkey/NC/19762/1988(H1N1))]
Length=498
Score = 1023 bits (2644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQAN+GEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANSGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|AAL87893.1|AF455703_1 nucleoprotein [Influenza A virus (A/Swine/Iowa/930/01(H1N2))]
Length=498
Score = 1023 bits (2644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIAS+ENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASSENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ER+T+MAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERSTIMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|AAG01780.1|AF251423_1 nucleoprotein [Influenza A virus (A/Swine/Iowa/569/99 (H3N2))]
Length=498
Score = 1023 bits (2644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/498 (98%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLP RSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPIRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|AAA74749.1| nucleoprotein [Influenza A virus (A/swine/IN/1726/1988(H1N1))]
gb|AAA74750.1| nucleoprotein [Influenza A virus (A/swine/WI/1915/1988(H1N1))]
gb|ABR29589.1| nucleocapsid protein [Influenza A virus (A/swine/Wisconsin/1915/1988(H1N1))]
Length=498
Score = 1023 bits (2644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLVRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMME+AKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMENAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|AAF73879.1|AF222769_1 nucleoprotein [Influenza A virus (A/Swine/Wisconsin/136/97(H1N1))]
Length=498
Score = 1022 bits (2643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/498 (97%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMET GERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETSGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRN+PF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNIPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|AAZ79397.1| nucleoprotein [Influenza A virus (A/swine/Zhejiang/1/2004(H1N2))]
Length=498
Score = 1022 bits (2643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRV+GKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVNGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLND+TYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDSTYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLR+SSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRISSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQ+ASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQRASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|AAA73104.1| nucleoprotein [Influenza A virus (A/Ohio/3523/1988(H1N1))]
Length=498
Score = 1022 bits (2643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/498 (97%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RG+QIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGIQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKP DLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPVDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|ACF17145.1| nucleocapsid protein [Influenza A virus (A/swine/Guangxi/17/2005(H1N2))]
Length=498
Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/498 (98%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMA HSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMARHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ABR29579.1| nucleocapsid protein [Influenza A virus (A/swine/Kansas/3228/1987(H1N1))]
gb|ABU80424.1| nucleocapsid protein [Influenza A virus (A/swine/Kansas/3024/1987(H1N1))]
Length=498
Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMME+AKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMENAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|AAL87894.1|AF455704_1 nucleoprotein [Influenza A virus (A/Swine/Indiana/P12439/00 (H1N2))]
Length=498
Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/498 (98%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
IT+ERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDK+EIRRVW
Sbjct 61 ITLERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKDEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFF DNAEEYDS
Sbjct 481 MSNEGSYFFEDNAEEYDS 498
>gb|ACI41026.1| nucleocapsid protein [Influenza A virus (A/turkey/NC/17026/1988(H1N1))]
Length=498
Score = 1021 bits (2641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/498 (97%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRN GNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNTGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|ABI19011.1| nucleoprotein [Influenza A virus (A/Iowa/CEID23/2005(H1N1))]
Length=498
Score = 1021 bits (2641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
IT+ERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITVERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGT+AMELIRMIKRGINDRNFWRGENGR+TR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTVAMELIRMIKRGINDRNFWRGENGRKTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRG+LST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGRLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMME+AKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMENAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ABR29609.1| nucleocapsid protein [Influenza A virus (A/swine/Iowa/3/1985(H1N1))]
gb|ABR29619.1| nucleocapsid protein [Influenza A virus (A/swine/Iowa/1/1985(H1N1))]
gb|ABW86600.1| nucleocapsid protein [Influenza A virus (A/swine/Iowa/2/1985(H1N1))]
Length=498
Score = 1021 bits (2641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RG+QIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGIQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMME+AKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMENAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|ABX58650.1| nucleocapsid protein [Influenza A virus (A/swine/Iowa/2/1987(H1N1))]
Length=498
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
+DPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 VDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNEN+E MDS+TLELRSRYWAIRTRSGGNT+QQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENMEAMDSSTLELRSRYWAIRTRSGGNTSQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|ACD35873.1| nucleocapsid protein [Influenza A virus (A/turkey/North Carolina/353568/2005(H3N2))]
Length=498
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/498 (97%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVG+MIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGKMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE M SNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMGSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVI+MMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIKMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ABI84662.1| nucleocapsid protein [Influenza A virus (A/turkey/Minnesota/12537/1989(H1N1))]
Length=498
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIY+RVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYKRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQR+LPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRSLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|ACJ53886.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/C13/2008(H5N2))]
Length=498
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKL+DY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLNDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVA+GHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVANGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERAT+MAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATIMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEY+S
Sbjct 481 MSNEGSYFFGDNAEEYES 498
>gb|AAF73878.1|AF222768_1 nucleoprotein [Influenza A virus (A/Swine/Wisconsin/125/97(H1N1))]
Length=498
Score = 1021 bits (2639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/498 (97%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMET GERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETSGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYR+VDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRKVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRN+PF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNIPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|AAA73112.1| nucleoprotein [Influenza A virus (A/Wisconsin/3623/1988(H1N1))]
Length=498
Score = 1021 bits (2639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/498 (97%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAF+GNNEGRTSDMRT +IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFAGNNEGRTSDMRTGIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|AAO88263.1|AF342819_1 nucleoprotein [Influenza A virus (A/Wisconsin/10/98 (H1N1))]
Length=498
Score = 1021 bits (2639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/498 (98%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPA+KSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAYKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPE LSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPETLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|ABR28739.1| nucleocapsid protein [Influenza A virus (A/swine/Wisconsin/641/1980(H1N1))]
gb|ABR28750.1| nucleocapsid protein [Influenza A virus (A/swine/Wisconsin/661/1980(H1N1))]
gb|ABR28761.1| nucleocapsid protein [Influenza A virus (A/swine/Wisconsin/8/1980(H1N1))]
gb|ABS49958.1| nucleocapsid protein [Influenza A virus (A/swine/Wisconsin/629/1980(H1N1))]
gb|ABU80280.1| nucleocapsid protein [Influenza A virus (A/swine/Wisconsin/663/1980(H1N1))]
Length=498
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/498 (97%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAF GNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFIGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|ABY81430.1| nucleocapsid protein [Influenza A virus (A/swine/Iowa/1/1986(H1N1))]
Length=498
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/498 (97%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMREL LYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELTLYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE+MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVESMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAF GNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFIGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|ABS50115.1| nucleocapsid protein [Influenza A virus (A/swine/Iowa/1/1987(H1N1))]
Length=498
Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RG+QIASNEN+E MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGIQIASNENMEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMME+AKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMENAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>sp|P26085.1|NCAP_I79A5 RecName: Full=Nucleoprotein; AltName: Full=Nucleocapsid protein;
Short=Protein N
gb|AAA52264.1| nucleoprotein [Influenza A virus (A/swine/Italy/2/1979(H1N1))]
Length=498
Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/498 (97%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRR+DGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAF GNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFIGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|ABI54394.1| nucleoprotein [Influenza A virus (A/swine/Korea/PZ72-1/2006(H3N1))]
gb|ABI54395.1| nucleoprotein [Influenza A virus (A/swine/Korea/CN22/2006(H3N1))]
Length=498
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/497 (97%), Positives = 495/497 (99%), Gaps = 0/497 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKL+DY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLNDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVA+GHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVANGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERAT+MAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATIMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYD 503
MSNEGSYFFGDNAEEY+
Sbjct 481 MSNEGSYFFGDNAEEYE 497
>gb|AAF73881.1|AF222771_1 nucleoprotein [Influenza A virus (A/Swine/Wisconsin/164/97(H1N1))]
Length=498
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANN EDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNSEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLVRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQ KASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQHKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGD+AEEYD+
Sbjct 481 MSNEGSYFFGDSAEEYDN 498
>gb|ABB86885.1| nucleoprotein [Influenza A virus (A/swine/Alberta/56626/03(H1N1))]
Length=498
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMI GIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMINGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
IT+ERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIY+RVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITVERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYKRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASA QISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASASQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|AAA73111.1| nucleoprotein [Influenza A virus (A/turkey/North Carolina/1790/1988(H1N1))]
Length=498
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAA
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAV 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRG NGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGPNGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|AAF75997.1|AF250127_1 nucleoprotein [influenza A virus (A/Swine/Indiana/9K035/99 (H1N2))]
Length=498
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/498 (98%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQ S
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQIS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDE+RNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDEKRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRTAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>gb|ACE78010.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/JL01/2005(H1N2))]
gb|ACE78013.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/Asan04/2006(H1N2))]
Length=498
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRR+W
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRIW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANN EDATAGLTHIMIWHSNLNDATYQRTRALVR GMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNNEDATAGLTHIMIWHSNLNDATYQRTRALVRAGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLR+SSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRISSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE +DSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEALDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|AAF73880.1|AF222770_1 nucleoprotein [Influenza A virus (A/Swine/Wisconsin/163/97(H1N1))]
gb|AAF73882.1|AF222772_1 nucleoprotein [Influenza A virus (A/Swine/Wisconsin/166/97(H1N1))]
Length=498
Score = 1019 bits (2635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANN EDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNSEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQ KASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQHKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGD+AEEYD+
Sbjct 481 MSNEGSYFFGDSAEEYDN 498
>gb|ABR28640.1| nucleocapsid protein [Influenza A virus (A/swine/Minnesota/5892-7/1979(H1N1))]
Length=498
Score = 1019 bits (2635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/498 (97%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKL+DY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLNDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAF GNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFIGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|ABY40429.1| nucleoprotein [Influenza A virus (A/swine/Missouri/2124514/2006(H2N3))]
Length=498
Score = 1019 bits (2635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/498 (97%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
+TIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 MTIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGL HIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLAHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGR+TR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRKTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRG+LST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGRLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMME+AKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMENAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ABB86905.1| nucleoprotein [Influenza A virus (A/swine/Ontario/53518/03(H1N1))]
Length=498
Score = 1019 bits (2635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/498 (97%), Positives = 496/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIAS+ENVE MDSNTLELRSRYWAIRT+SGGNT+QQKASAGQISVQPTFSVQRN+PF
Sbjct 361 RGVQIASSENVEAMDSNTLELRSRYWAIRTKSGGNTSQQKASAGQISVQPTFSVQRNIPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ER+T+M+AFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERSTIMSAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ABB86935.1| nucleoprotein [Influenza A virus (A/swine/Ontario/23866/04(H1N1))]
Length=498
Score = 1019 bits (2634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/498 (97%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRM+GGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMVGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIAS+E VE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASSETVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ER+T+MAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERSTIMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYD+
Sbjct 481 MSNEGSYFFGDNAEEYDN 498
>sp|P15679.2|NCAP_I77AC RecName: Full=Nucleoprotein; AltName: Full=Nucleocapsid protein;
Short=Protein N
gb|AAA43455.1| nucleoprotein [Influenza A virus (A/swine/Tennessee/24/1977(H1N1))]
gb|ABD95716.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/25/1977(H1N1))]
12 more sequence titles
gb|ABR28552.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/62/1977(H1N1))]
gb|ABR28574.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/79/1977(H1N1))]
gb|ABR28662.1| nucleocapsid protein [Influenza A virus (A/swine/Ontario/4/1981(H1N1))]
gb|ABR28673.1| nucleocapsid protein [Influenza A virus (A/swine/Ontario/7/1981(H1N1))]
gb|ABR28717.1| nucleocapsid protein [Influenza A virus (A/swine/Wisconsin/11/1980(H1N1))]
gb|ABS49936.1| nucleocapsid protein [Influenza A virus (A/swine/Ontario/1/1981(H1N1))]
gb|ABU80203.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/61/1977(H1N1))]
gb|ABU80214.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/96/1977(H1N1))]
gb|ABW36337.1| nucleocapsid protein [Influenza A virus (A/swine/Ontario/2/1981(H1N1))]
gb|ABW36348.1| nucleocapsid protein [Influenza A virus (A/swine/Ontario/3/1981(H1N1))]
gb|ABW36359.1| nucleocapsid protein [Influenza A virus (A/swine/Ontario/6/1981(H1N1))]
gb|ABW36381.1| nucleocapsid protein [Influenza A virus (A/swine/Iowa/100/1977(H1N1))]
Length=498
Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVS FIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSGFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAF GNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFIGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|ABB86895.1| nucleoprotein [Influenza A virus (A/swine/Ontario/55383/04(H1N2))]
Length=504
Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/504 (96%), Positives = 497/504 (98%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQM TELKLSDY+G
Sbjct 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMRTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERM LSAFDERRNKYLEEHPSAGKDPKKTGGPIYRR +GKWMRELILYDKE
Sbjct 61 RLIQNSITIERMALSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRANGKWMRELILYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRRVWRQAN GEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR
Sbjct 121 EIRRVWRQANVGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAA
Sbjct 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
QRAMMDQVRESRNPGNAEIEDLIFLARSALILRG+VAHKSCLPACVYGLAVASGHDFERE
Sbjct 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGAVAHKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVGIDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLR+SSFIRGKKVIP
Sbjct 301 GYSLVGIDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRISSFIRGKKVIP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGKLSTRG+QIAS+ENVE MDSNTLELRSRYWAIRTRSGGNTNQQKAS+GQISVQPTFSV
Sbjct 361 RGKLSTRGIQIASSENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASSGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QRNLPFER+T+MAAF GNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP
Sbjct 421 QRNLPFERSTIMAAFRGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
>gb|AAF73883.1|AF222773_1 nucleoprotein [Influenza A virus (A/Swine/Wisconsin/168/97(H1N1))]
Length=498
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MA+QGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MATQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANN EDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNSEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQ KASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQHKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGD+AEEYD+
Sbjct 481 MSNEGSYFFGDSAEEYDN 498
>sp|P26084.1|NCAP_I76AG RecName: Full=Nucleoprotein; AltName: Full=Nucleocapsid protein;
Short=Protein N
gb|AAA52263.1| nucleoprotein [Influenza A virus (A/swine/Italy/437/1976(H1N1))]
gb|ABQ45418.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/3/1976(H1N1))]
31 more sequence titles
gb|ABQ45429.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/7/1976(H1N1))]
gb|ABQ45440.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/15/1976(H1N1))]
gb|ABQ45451.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/17/1976(H1N1))]
gb|ABR15834.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/19/1977(H1N1))]
gb|ABR15845.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/21/1977(H1N1))]
gb|ABR15856.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/31/1977(H1N1))]
gb|ABR15867.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/49/1977(H1N1))]
gb|ABR15878.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/64/1977(H1N1))]
gb|ABR28541.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/10/1977(H1N1))]
gb|ABR28563.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/65/1977(H1N1))]
gb|ABR28585.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/82/1977(H1N1))]
gb|ABR28618.1| nucleocapsid protein [Influenza A virus (A/swine/Kentucky/1/1976(H1N1))]
gb|ABR28651.1| nucleocapsid protein [Influenza A virus (A/swine/Nebraska/123/1977(H1N1))]
gb|ABR28695.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/11/1978(H1N1))]
gb|ABU80225.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/84/1977(H1N1))]
gb|ABU80236.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/86/1977(H1N1))]
gb|ABU80247.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/87/1977(H1N1))]
gb|ABU80258.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/88/1977(H1N1))]
gb|ABU80269.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/10/1978(H1N1))]
gb|ABU80414.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/48/1977(H1N1))]
gb|ABV29528.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/37/1977(H1N1))]
gb|ABV45842.1| nucleocapsid protein [Influenza A virus (A/Wisconsin/301/1976(H1N1))]
gb|ABW36326.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/23/1976(H1N1))]
gb|ABW36370.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/10/1976(H1N1))]
gb|ABW71507.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/2/1978(H1N1))]
gb|ABW86578.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/5/1978(H1N1))]
gb|ABW86589.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/8/1978(H1N1))]
gb|ABX58672.1| nucleocapsid protein [Influenza A virus (A/swine/Wisconsin/30747/1976(H1N1))]
gb|ABY51208.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/4/1978(H1N1))]
gb|ABY51219.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/7/1978(H1N1))]
gb|ACA96534.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/9/1978(H1N1))]
Length=498
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRR+DGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVS FIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSGFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAF GNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFIGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|AAL87890.1|AF455700_1 nucleoprotein [Influenza A virus (A/Swine/North Carolina/98225/01(H1N2))]
Length=504
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/504 (96%), Positives = 496/504 (98%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+G
Sbjct 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE
Sbjct 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR
Sbjct 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKG+GTIAM LIRMIKRGINDR+FWRGENGRRTR+A ERMCN+LKGKFQT A
Sbjct 181 RSGAAGAAVKGIGTIAMGLIRMIKRGINDRDFWRGENGRRTRIACERMCNVLKGKFQTTA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
Q AMMDQVRESRNPGNAEIE IFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE
Sbjct 241 QXAMMDQVRESRNPGNAEIEXXIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVGIDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP
Sbjct 301 GYSLVGIDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGKLSTRGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQ+ASAGQISVQPTFSV
Sbjct 361 RGKLSTRGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQRASAGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+P
Sbjct 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
>gb|AAG01789.1|AF251431_1 nucleoprotein [Influenza A virus (A/Swine/Minnesota/593/99 (H3N2))]
Length=498
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGY LVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYLLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+R NENPA+KSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRLNENPAYKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>dbj|BAG49623.1| nucleoprotein [Influenza A virus (A/swine/Miyazaki/1/2006(H1N2))]
Length=504
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/504 (96%), Positives = 498/504 (98%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIE MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+G
Sbjct 1 MSDIEIMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMREL LYDKE
Sbjct 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELTLYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR
Sbjct 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKG+GTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAA
Sbjct 181 RSGAAGAAVKGIGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
QRAMMDQVRESR+PGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE
Sbjct 241 QRAMMDQVRESRSPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVG+DPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVS FIRGKKV+P
Sbjct 301 GYSLVGVDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSGFIRGKKVVP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGKLSTRGVQIASNE+VE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV
Sbjct 361 RGKLSTRGVQIASNESVENMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QRNLPFERATVMAAF GNNEGRTSDMRTE+IRMME+AKPED+SFQGRGVFELSDEKATNP
Sbjct 421 QRNLPFERATVMAAFIGNNEGRTSDMRTEIIRMMENAKPEDVSFQGRGVFELSDEKATNP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDM+NEGSYFFGDNAEEYD+
Sbjct 481 IVPSFDMNNEGSYFFGDNAEEYDN 504
>gb|ABY40441.1| nucleoprotein [Influenza A virus (A/swine/Missouri/4296424/2006(H2N3))]
Length=498
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/498 (97%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
+TIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 MTIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGL HIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLAHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGT+AMELIRMIKRGINDRNFWRGENGR+TR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTVAMELIRMIKRGINDRNFWRGENGRKTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRG+LST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGRLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERAT+MAAFSGNNEGRTSDMRTEVIRMME+AKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATIMAAFSGNNEGRTSDMRTEVIRMMENAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ACE78009.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/Hongsong2/2004(H1N2))]
gb|ACE78012.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/JL04/2005(H1N2))]
Length=498
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRR+W
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRIW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANN EDATAGLTHIMIWHSNLNDATYQRTRALVR GMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNNEDATAGLTHIMIWHSNLNDATYQRTRALVRAGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLR+SSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRISSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE +DSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEALDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEE+DS
Sbjct 481 MSNEGSYFFGDNAEEFDS 498
>gb|ACE78011.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/JL02/2005(H1N2))]
gb|ACE78014.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/PZ4/2006(H1N2))]
gb|ACE78015.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/PZ7/2006(H1N2))]
gb|ACE78016.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/PZ14/2006(H1N2))]
gb|ACE78017.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/CY08/2007(H1N2))]
Length=498
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANN EDATAGLTHIMIWHSNLNDATYQRTRALVR GMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNNEDATAGLTHIMIWHSNLNDATYQRTRALVRAGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLR+SSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRISSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNE+VE +DSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNESVEALDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERAT+MAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATIMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|AAF73884.1|AF222774_1 nucleoprotein [Influenza A virus (A/Swine/Wisconsin/235/97(H1N1))]
Length=498
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLVRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLP
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPL 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
E +TVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ESSTVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGD+AEEYD+
Sbjct 481 MSNEGSYFFGDSAEEYDN 498
>gb|ABR28629.1| nucleocapsid protein [Influenza A virus (A/swine/Minnesota/27/1976(H1N1))]
gb|ABU80192.1| nucleocapsid protein [Influenza A virus (A/swine/Minnesota/24/1975(H1N1))]
Length=498
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRR+DGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
+DPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVS FIRGKKV+PRGKLST
Sbjct 301 VDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSGFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAF GNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFIGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|AAN46830.1| nucleoprotein [Influenza A virus (A/Swine/Korea/CY02/02(H1N2))]
Length=504
Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/504 (97%), Positives = 494/504 (98%), Gaps = 0/504 (0%)
Query 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDG 60
MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+G
Sbjct 1 MSDIEAMASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEG 60
Query 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE
Sbjct 61 RLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKE 120
Query 121 EIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPR 180
EIRRVWRQANN EDATAGLTHIMIWHSNLNDATYQRTRALVR GMDPRMCSLMQGSTLPR
Sbjct 121 EIRRVWRQANNNEDATAGLTHIMIWHSNLNDATYQRTRALVRAGMDPRMCSLMQGSTLPR 180
Query 181 RSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAA 240
RSGAAGAAVKGVGTIAMELIRMIKRGIN RNFWRGENGRRTR+AYERMCNILKGKFQTAA
Sbjct 181 RSGAAGAAVKGVGTIAMELIRMIKRGINGRNFWRGENGRRTRIAYERMCNILKGKFQTAA 240
Query 241 QRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
QRAMMD VRESRNPG AEIED IFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE
Sbjct 241 QRAMMDPVRESRNPGTAEIEDFIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFERE 300
Query 301 GYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIP 360
GYSLVGIDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFED RVSSFIRGKKVIP
Sbjct 301 GYSLVGIDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDPRVSSFIRGKKVIP 360
Query 361 RGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
RGK STRGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV
Sbjct 361 RGKPSTRGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSV 420
Query 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNP 480
QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+P
Sbjct 421 QRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSP 480
Query 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
IVPSFDMSNEGSYFFGDNAEEYDS
Sbjct 481 IVPSFDMSNEGSYFFGDNAEEYDS 504
>gb|ABA46961.1| nucleoprotein [Influenza A virus (A/swine/Minnesota/00395/2004(H3N1))]
Length=495
Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/495 (98%), Positives = 493/495 (99%), Gaps = 0/495 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEE 501
MSNEGSYFFGDNAEE
Sbjct 481 MSNEGSYFFGDNAEE 495
>gb|ABR28728.1| nucleocapsid protein [Influenza A virus (A/swine/Wisconsin/2/1970(H1N1))]
gb|ABV82588.1| nucleocapsid protein [Influenza A virus (A/swine/Wisconsin/1/1967(H1N1))]
Length=498
Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/498 (97%), Positives = 493/498 (98%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRR+DGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTI MELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIVMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVS FIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSGFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAF GNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFVGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|ACE78020.1| nucleocapsid protein [Influenza A virus (A/swine/Korea/CAS07/2005(H3N2))]
Length=498
Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/498 (97%), Positives = 493/498 (98%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEI RVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIGRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQAN GEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANIGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQT AQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTTAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQ+ASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQRASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ABX58661.1| nucleocapsid protein [Influenza A virus (A/swine/Tennessee/3/1978(H1N1))]
Length=498
Score = 1017 bits (2629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRR+DGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVS FIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSGFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
+RATVMAAF GNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 DRATVMAAFIGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|ABQ45462.1| nucleocapsid protein [Influenza A virus (A/swine/Iowa/1/1976(H1N1))]
Length=498
Score = 1017 bits (2629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/498 (97%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRR+DGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVS FIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSGFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAF GNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPI+PSFD
Sbjct 421 ERATVMAAFIGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPILPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|ACD88520.1| nucleocapsid protein [Influenza A virus (A/turkey/KS/4880/1980(H1N1))]
gb|ACD88696.1| nucleocapsid protein [Influenza A virus (A/chicken/PA/35154/1991(H1N1))]
Length=498
Score = 1017 bits (2629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/498 (97%), Positives = 493/498 (98%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRM+GGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMVGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTI MELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTITMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVS FIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSGFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDS+TLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSSTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATVMAAF GNNEGRTSDMRTE+IRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERATVMAAFIGNNEGRTSDMRTEIIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEEYD+
Sbjct 481 MNNEGSYFFGDNAEEYDN 498
>gb|ABB86875.1| nucleoprotein [Influenza A virus (A/swine/Ontario/57561/03(H1N1))]
Length=498
Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/498 (96%), Positives = 495/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRM+GGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMVGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
ITIERM LSAFDERRN+YLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITIERMALSAFDERRNRYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIAS+ENVE MDSNTLELRSRYWAIRT+SGGNT+QQKASAGQISVQPTFSVQRN+PF
Sbjct 361 RGVQIASSENVEAMDSNTLELRSRYWAIRTKSGGNTSQQKASAGQISVQPTFSVQRNIPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ER+T+M+AFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERSTIMSAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>gb|ACD35866.1| nucleocapsid protein [Influenza A virus (A/turkey/Minnesota/366767/2005(H3N2))]
Length=498
Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/498 (97%), Positives = 493/498 (98%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIG+FYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGKFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
+TIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 MTIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
I PFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST
Sbjct 301 IGPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTF VQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFPVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ERATV+AAFSGNNEGRTSDMRTEVIRMMES KPEDLSFQGRGVFELSDEKAT+PIVPSFD
Sbjct 421 ERATVLAAFSGNNEGRTSDMRTEVIRMMESVKPEDLSFQGRGVFELSDEKATSPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
MSNEGSYFFGDNAEEYDS
Sbjct 481 MSNEGSYFFGDNAEEYDS 498
>dbj|BAH02121.1| nucleoprotein [Influenza A virus (A/swine/Nakhon pathom/NIAH586-1/2005(H3N2))]
Length=498
Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/498 (96%), Positives = 494/498 (99%), Gaps = 0/498 (0%)
Query 7 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNS 66
MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDY+GRLIQNS
Sbjct 1 MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYEGRLIQNS 60
Query 67 ITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 126
IT+ERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW
Sbjct 61 ITLERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVW 120
Query 127 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 186
RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG
Sbjct 121 RQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 180
Query 187 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMD 246
AAVKGVGTIAMELIRMIKRGINDRNFWRGENGR+TR+AYERMCNILKGKFQTAAQRAMMD
Sbjct 181 AAVKGVGTIAMELIRMIKRGINDRNFWRGENGRKTRIAYERMCNILKGKFQTAAQRAMMD 240
Query 247 QVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 306
QVRESRNPGNAEIEDLIFL RSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG
Sbjct 241 QVRESRNPGNAEIEDLIFLTRSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVG 300
Query 307 IDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLST 366
IDPFKLLQNSQV SL+RPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKV+PRGKLST
Sbjct 301 IDPFKLLQNSQVFSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVVPRGKLST 360
Query 367 RGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPF 426
RGVQIASNENVE MDSNTLELRSRYWAIRTRSGGNTNQQKASAGQ+SVQPTFSVQRNLPF
Sbjct 361 RGVQIASNENVEAMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQVSVQPTFSVQRNLPF 420
Query 427 ERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFD 486
ER T+MAAFSGNNEGRTSDMRTEVIRMME+AKPEDLSFQGRGVFELSDEKATNPIVPSFD
Sbjct 421 ERTTIMAAFSGNNEGRTSDMRTEVIRMMENAKPEDLSFQGRGVFELSDEKATNPIVPSFD 480
Query 487 MSNEGSYFFGDNAEEYDS 504
M+NEGSYFFGDNAEE+D+
Sbjct 481 MNNEGSYFFGDNAEEFDN 498
