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Sandbox 49

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Current revision (02:11, 17 October 2012) (edit) (undo)
 
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{{STRUCTURE_1a4v | PDB=1a4v | SCENE= }}
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<!-- PLEASE DO NOT DELETE THIS TEMPLATE -->
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{{Template:Oberholser_Sandbox_Reservation}}
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==='''Structure'''===
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<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
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To the right is the <scene name='Sandbox_49/Stick/1'>stick structure</scene>
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<Structure load='1AKE' size='500' frame='true' align='right' caption='Adenylate Kinase' scene='Insert optional scene name here'/>
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of Alpha Lactalbumin which is found in cow milk.
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<scene name='Sandbox_49/Ak_backbone/1'>Backbone</scene>
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<scene name='Sandbox_49/Ak_alpha_helices/1'>Alpha_helices</scene>
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The <scene name='Sandbox_49/Secondary_structure/1'>Secondary structure</scene> of the protein is displayed. Alpha helix are shown as rockets and beta strands as planks. Random coils are white.
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<scene name='Sandbox_49/Ak_beta_sheets/1'>Beta_sheets</scene>
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<scene name='Sandbox_49/Ak_secondary_structures/1'>secondary_structure</scene>
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----
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<scene name='Sandbox_49/Ak_hydrogen_bonds/1'>hydrogen_bonds</scene>
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<scene name='Sandbox_49/Ak_hydrophobic_residues/1'>hydrophobic_residues</scene>
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==='''Hydrophobic and polar areas'''===
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<scene name='Sandbox_49/Hydrophobic_and_polar/3'>Hydrophobic and polar</scene> structure where pink balls are polar. Grey is hydrophobic and green ball are calcium.
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==='''Chain of amino acids'''===
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<scene name='Sandbox_49/Chain_of_amino_acids/2'>The amino acids</scene> figure is displayed where the carboxyl terminal is in red and the Nitrogen terminal is in blue. The <scene name='Sandbox_49/Lysine_residues/1'>Lysine residues</scene> is noted with (*)while the atoms connected to it are displayed in ball and stick structure. The lysine is bind to the atoms by hydrogen or hydrophic bonds.
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==='''The Cationic and anionic residues'''===
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<scene name='Sandbox_49/Cationic_vs_ionic_residues/1'>cationic and anionic</scene> structre where red mean cationic and blue means anionic. Red sidechain are oxygens in Asp and Glu, sidechain nitrogens are in Lys, Arg, and His.
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===The distribution of polar and nonpolar side chain===
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<scene name='Sandbox_49/The_distribution_of_polar/1'>TextToBeDisplayed</scene>
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Current revision

Please do NOT make changes to this Sandbox. Sandboxes 30-60 are reserved for use by Biochemistry 410 & 412 at Messiah College taught by Dr. Hannah Tims during Fall 2012 and Spring 2013.

Adenylate Kinase

Drag the structure with the mouse to rotate

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