3gn9

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{{Seed}}
 
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[[Image:3gn9.png|left|200px]]
 
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==Crystal structure of the major pseudopilin from the type 2 secretion system of Vibrio vulnificus==
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The line below this paragraph, containing "STRUCTURE_3gn9", creates the "Structure Box" on the page.
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<StructureSection load='3gn9' size='340' side='right'caption='[[3gn9]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3gn9]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_vulnificus Vibrio vulnificus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GN9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GN9 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MLT:D-MALATE'>MLT</scene></td></tr>
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{{STRUCTURE_3gn9| PDB=3gn9 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gn9 OCA], [https://pdbe.org/3gn9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gn9 RCSB], [https://www.ebi.ac.uk/pdbsum/3gn9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gn9 ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gn/3gn9_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gn9 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The pseudopilus is a key feature of the type 2 secretion system (T2SS) and is made up of multiple pseudopilins that are similar in fold to the type 4 pilins. However, pilins have disulfide bridges, whereas the major pseudopilins of T2SS do not. A key question is therefore how the pseudopilins, and in particular, the most abundant major pseudopilin, GspG, obtain sufficient stability to perform their function. Crystal structures of Vibrio cholerae, Vibrio vulnificus, and enterohemorrhagic Escherichia coli (EHEC) GspG were elucidated, and all show a calcium ion bound at the same site. Conservation of the calcium ligands fully supports the suggestion that calcium ion binding by the major pseudopilin is essential for the T2SS. Functional studies of GspG with mutated calcium ion-coordinating ligands were performed to investigate this hypothesis and show that in vivo protease secretion by the T2SS is severely impaired. Taking all evidence together, this allows the conclusion that, in complete contrast to the situation in the type 4 pili system homologs, in the T2SS, the major protein component of the central pseudopilus is dependent on calcium ions for activity.
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===Crystal structure of the major pseudopilin from the type 2 secretion system of Vibrio vulnificus===
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Calcium is essential for the major pseudopilin in the type 2 secretion system.,Korotkov KV, Gray MD, Kreger A, Turley S, Sandkvist M, Hol WG J Biol Chem. 2009 Sep 18;284(38):25466-70. Epub 2009 Jul 29. PMID:19640838<ref>PMID:19640838</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3gn9" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19640838}}, adds the Publication Abstract to the page
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*[[Pseudopilin|Pseudopilin]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19640838 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19640838}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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3GN9 is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Vibrio_vulnificus Vibrio vulnificus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GN9 OCA].
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==Reference==
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<ref group="xtra">PMID:19640838</ref><references group="xtra"/>
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[[Category: Vibrio vulnificus]]
[[Category: Vibrio vulnificus]]
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[[Category: Gray, M D.]]
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[[Category: Gray MD]]
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[[Category: Hol, W G.J.]]
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[[Category: Hol WGJ]]
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[[Category: Korotkov, K V.]]
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[[Category: Korotkov KV]]
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[[Category: Kreger, A.]]
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[[Category: Kreger A]]
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[[Category: Sandkvist, M.]]
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[[Category: Sandkvist M]]
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[[Category: Turley, S.]]
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[[Category: Turley S]]
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[[Category: Complex]]
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[[Category: General secretory pathway]]
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[[Category: Major pilin]]
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[[Category: Methylation]]
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[[Category: Protein transport]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 30 08:42:09 2009''
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Current revision

Crystal structure of the major pseudopilin from the type 2 secretion system of Vibrio vulnificus

PDB ID 3gn9

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