2klw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:34, 2 February 2022) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2klw.png|left|200px]]
 
-
<!--
+
==Solution structure of an abc collagen heterotrimer reveals a single-register helix stabilized by electrostatic interactions==
-
The line below this paragraph, containing "STRUCTURE_2klw", creates the "Structure Box" on the page.
+
<StructureSection load='2klw' size='340' side='right'caption='[[2klw]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2klw]] is a 3 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KLW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KLW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2klw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2klw OCA], [https://pdbe.org/2klw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2klw RCSB], [https://www.ebi.ac.uk/pdbsum/2klw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2klw ProSAT]</span></td></tr>
-
{{STRUCTURE_2klw| PDB=2klw | SCENE= }}
+
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kl/2klw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2klw ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Collagen, known for its structural role in tissues and also for its participation in the regulation of homeostatic and pathological processes in mammals, is assembled from triple helices that can be either homotrimers or heterotrimers. High resolution structural information for natural collagens has been difficult to obtain because of their size and the heterogeneity of their native environment. For this reason, peptides that self-assemble into collagen-like triple helices are used to gain insight into the structure, stability, and biochemistry of this important protein family. Although many of the most common collagens in humans are heterotrimers, almost all studies of collagen helices have been on homotrimers. Here we report the first structure of a collagen heterotrimer. Our structure, obtained by solution NMR, highlights the role of electrostatic interactions as stabilizing factors within the triple helical folding motif. This addresses an issue that has been actively researched because of the predominance of charged residues in the collagen family. We also find that it is possible to selectively form a collagen heterotrimer with a well defined composition and register of the peptide chains within the helix, based on information encoded solely in the collagenous domain. Globular domains are implicated in determining the composition of several collagen types, but it is unclear what their role in controlling register may be. We show that is possible to design peptides that not only selectively choose a composition but also a specific register without the assistance of other protein constructs. This mechanism may be used in nature as well.
-
===Solution structure of an abc collagen heterotrimer reveals a single-register helix stabilized by electrostatic interactions===
+
Solution structure of an ABC collagen heterotrimer reveals a single-register helix stabilized by electrostatic interactions.,Fallas JA, Gauba V, Hartgerink JD J Biol Chem. 2009 Sep 25;284(39):26851-9. Epub 2009 Jul 22. PMID:19625247<ref>PMID:19625247</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_19625247}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2klw" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 19625247 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_19625247}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
2KLW is a 3 chains structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KLW OCA].
+
[[Category: Fallas, J A]]
-
 
+
[[Category: Gauba, V]]
-
==Reference==
+
[[Category: Hartgerink, J D]]
-
<ref group="xtra">PMID:19625247</ref><references group="xtra"/>
+
-
[[Category: Fallas, J A.]]
+
-
[[Category: Gauba, V.]]
+
-
[[Category: Hartgerink, J D.]]
+
[[Category: Collagen]]
[[Category: Collagen]]
[[Category: De novo protein]]
[[Category: De novo protein]]
[[Category: Heterotrimer]]
[[Category: Heterotrimer]]
[[Category: Synthetic peptide]]
[[Category: Synthetic peptide]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 7 13:30:42 2009''
 

Current revision

Solution structure of an abc collagen heterotrimer reveals a single-register helix stabilized by electrostatic interactions

PDB ID 2klw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools