This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ztj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:58, 13 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2ztj.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of homocitrate synthase from Thermus thermophilus complexed with alpha-ketoglutarate==
-
The line below this paragraph, containing "STRUCTURE_2ztj", creates the "Structure Box" on the page.
+
<StructureSection load='2ztj' size='340' side='right'caption='[[2ztj]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ztj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB27 Thermus thermophilus HB27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZTJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZTJ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
-
{{STRUCTURE_2ztj| PDB=2ztj | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ztj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ztj OCA], [https://pdbe.org/2ztj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ztj RCSB], [https://www.ebi.ac.uk/pdbsum/2ztj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ztj ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HOSA_THET2 HOSA_THET2] Catalyzes the aldol-type condensation of 2-oxoglutarate with acetyl-CoA to yield homocitrate (PubMed:19996101, PubMed:12095615). Carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway (PubMed:9868782). To a lesser extent, can also use oxaloacetate in place of 2-oxoglutarate, leading to citrate. Does not display 2-isopropylmalate synthase activity since it cannot use 2-oxoisovalerate (PubMed:12095615).<ref>PMID:12095615</ref> <ref>PMID:19996101</ref> <ref>PMID:9868782</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zt/2ztj_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ztj ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of homocitrate synthase from Thermus thermophilus complexed with alpha-ketoglutarate===
+
==See Also==
-
 
+
*[[Homocitrate synthase|Homocitrate synthase]]
-
 
+
== References ==
-
==About this Structure==
+
<references/>
-
2ZTJ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb27 Thermus thermophilus hb27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZTJ OCA].
+
__TOC__
-
[[Category: Homocitrate synthase]]
+
</StructureSection>
-
[[Category: Thermus thermophilus hb27]]
+
[[Category: Large Structures]]
-
[[Category: Kuzuyama, T.]]
+
[[Category: Thermus thermophilus HB27]]
-
[[Category: Nishiyama, M.]]
+
[[Category: Kuzuyama T]]
-
[[Category: Okada, T.]]
+
[[Category: Nishiyama M]]
-
[[Category: Tomita, T.]]
+
[[Category: Okada T]]
-
[[Category: Amino-acid biosynthesis]]
+
[[Category: Tomita T]]
-
[[Category: Cytoplasm]]
+
-
[[Category: Lysine biosynthesis]]
+
-
[[Category: Substrate complex]]
+
-
[[Category: Transferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 14 10:29:43 2009''
+

Current revision

Crystal structure of homocitrate synthase from Thermus thermophilus complexed with alpha-ketoglutarate

PDB ID 2ztj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools