This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3jzv
From Proteopedia
(Difference between revisions)
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:3jzv.jpg|left|200px]] | ||
| - | + | ==Crystal structure of Rru_A2000 from Rhodospirillum rubrum: A cupin-2 domain.== | |
| - | + | <StructureSection load='3jzv' size='340' side='right' caption='[[3jzv]], [[Resolution|resolution]] 2.30Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3jzv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhort Rhort]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JZV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JZV FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Rru_A2000 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269796 RHORT])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3jzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jzv OCA], [http://pdbe.org/3jzv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3jzv RCSB], [http://www.ebi.ac.uk/pdbsum/3jzv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3jzv ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | == | + | Check<jmol> |
| - | + | <jmolCheckbox> | |
| - | [[Category: | + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jz/3jzv_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Almo, S C | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Burley, S K | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: Ramagopal, U A | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jzv ConSurf]. |
| - | [[Category: Toro, R | + | <div style="clear:both"></div> |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Rhort]] | ||
| + | [[Category: Almo, S C]] | ||
| + | [[Category: Burley, S K]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Ramagopal, U A]] | ||
| + | [[Category: Toro, R]] | ||
[[Category: Cupin-2 fold]] | [[Category: Cupin-2 fold]] | ||
| - | [[Category: New | + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] |
| - | + | [[Category: PSI, Protein structure initiative]] | |
| - | [[Category: Protein structure initiative | + | |
| - | + | ||
| - | + | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
| - | |||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 14 10:39:14 2009'' | ||
Current revision
Crystal structure of Rru_A2000 from Rhodospirillum rubrum: A cupin-2 domain.
| |||||||||||
