2kdx

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{{Seed}}
 
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[[Image:2kdx.jpg|left|200px]]
 
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==Solution structure of HypA protein==
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The line below this paragraph, containing "STRUCTURE_2kdx", creates the "Structure Box" on the page.
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<StructureSection load='2kdx' size='340' side='right'caption='[[2kdx]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2kdx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KDX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KDX FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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{{STRUCTURE_2kdx| PDB=2kdx | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kdx OCA], [https://pdbe.org/2kdx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kdx RCSB], [https://www.ebi.ac.uk/pdbsum/2kdx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kdx ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/HYPA_HELPY HYPA_HELPY] Plays a role in both the hydrogenase and the urease nickel cofactor insertion step.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kd/2kdx_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kdx ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Metallochaperones bind metals and ensure the safe delivery of metals to the targets. They are required for the activation and maturation of nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. Metallochaperone HypA was found to be essential to facilitate nickel delivery to hydrogenase together with its partner HypB, although the detailed mechanism is not clear. In this study, we have cloned hypA gene from Helicobacter pylori (strain 26695), overexpressed, and purified the protein. The zinc-bound HypA (Zn-HypA) exists as a monomer in solution, and its solution structure was determined by NMR spectroscopy together with molecular dynamics simulated annealing. Zn-HypA folds into two domains, including a zinc domain and a nickel domain with a mixed alpha/beta structure. The former houses a rigid zinc-binding site possibly with the role of structural stabilization, whereas the latter harbors a nickel-binding site at the N-terminus. Zinc binds to the four conserved cysteines tetrahedrally as evidenced by (113)Cd NMR spectroscopy, and nickel coordinates with four nitrogens of the protein probably in a square-planar geometry. Low coordination number of Ni(2+) may allow the metal to be readily transferred to its downstream receptors. Our studies may shed light on how the metallochaperone exerts its functions in intracellular nickel delivery.
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===Solution structure of HypA protein===
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Structure of a nickel chaperone, HypA, from Helicobacter pylori reveals two distinct metal binding sites.,Xia W, Li H, Sze KH, Sun H J Am Chem Soc. 2009 Jul 29;131(29):10031-40. PMID:19621959<ref>PMID:19621959</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2kdx" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19621959}}, adds the Publication Abstract to the page
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*[[HypA%2C HypB%2C HypC%2C HypD%2C HypE and HypF 3D structures|HypA%2C HypB%2C HypC%2C HypD%2C HypE and HypF 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19621959 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19621959}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Helicobacter pylori 26695]]
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2KDX is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KDX OCA].
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[[Category: Large Structures]]
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[[Category: Li H]]
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==Reference==
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[[Category: Sze K-H]]
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<ref group="xtra">PMID:19621959</ref><references group="xtra"/>
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[[Category: Xia W]]
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[[Category: Helicobacter pylori]]
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[[Category: Li, H.]]
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[[Category: Sze, K H.]]
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[[Category: Xia, W.]]
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[[Category: Hydrogenase]]
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[[Category: Metal-binding]]
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[[Category: Metal-binding protein]]
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[[Category: Metallochaperone]]
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[[Category: Nickel]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 21 10:17:21 2009''
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Current revision

Solution structure of HypA protein

PDB ID 2kdx

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