This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3is5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:57, 6 September 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3is5.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of CDPK kinase domain from toxoplasma Gondii, TGME49_018720==
-
The line below this paragraph, containing "STRUCTURE_3is5", creates the "Structure Box" on the page.
+
<StructureSection load='3is5' size='340' side='right'caption='[[3is5]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3is5]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Toxoplasma_gondii_ME49 Toxoplasma gondii ME49]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IS5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IS5 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
{{STRUCTURE_3is5| PDB=3is5 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3is5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3is5 OCA], [https://pdbe.org/3is5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3is5 RCSB], [https://www.ebi.ac.uk/pdbsum/3is5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3is5 ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/is/3is5_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3is5 ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of CDPK kinase domain from toxoplasma Gondii, TGME49_018720===
+
==See Also==
-
 
+
*[[Calcium-dependent protein kinase|Calcium-dependent protein kinase]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3IS5 is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Toxoplasma_gondii_me49 Toxoplasma gondii me49]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IS5 OCA].
+
[[Category: Large Structures]]
-
[[Category: Calcium/calmodulin-dependent protein kinase]]
+
[[Category: Toxoplasma gondii ME49]]
-
[[Category: Toxoplasma gondii me49]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Arrowsmith, C H.]]
+
[[Category: Artz JD]]
-
[[Category: Artz, J D.]]
+
[[Category: Bochkarev A]]
-
[[Category: Bochkarev, A.]]
+
[[Category: Bountra C]]
-
[[Category: Bountra, C.]]
+
[[Category: Cossar D]]
-
[[Category: Cossar, D.]]
+
[[Category: Edwards AM]]
-
[[Category: Edwards, A M.]]
+
[[Category: Hui R]]
-
[[Category: Hui, R.]]
+
[[Category: Hutchinson A]]
-
[[Category: Hutchinson, A.]]
+
[[Category: Kozieradzki I]]
-
[[Category: Kozieradzki, I.]]
+
[[Category: Lin YH]]
-
[[Category: Lin, Y H.]]
+
[[Category: MacKenzie F]]
-
[[Category: MacKenzie, F.]]
+
[[Category: Senisterra G]]
-
[[Category: SGC, Structural Genomics Consortium.]]
+
[[Category: Weigelt J]]
-
[[Category: Senisterra, G.]]
+
[[Category: Wernimont AK]]
-
[[Category: Weigelt, J.]]
+
-
[[Category: Wernimont, A K.]]
+
-
[[Category: Atp-binding]]
+
-
[[Category: Calcium]]
+
-
[[Category: Cdpk]]
+
-
[[Category: Kinase]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Parasitology]]
+
-
[[Category: Serine/threonine-protein kinase]]
+
-
[[Category: Sgc]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Structural genomics consortium]]
+
-
[[Category: Toxoplasma gondii]]
+
-
[[Category: Transferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 21 10:39:18 2009''
+

Current revision

Crystal structure of CDPK kinase domain from toxoplasma Gondii, TGME49_018720

PDB ID 3is5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools