This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3k2g
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:3k2g.png|left|200px]] | ||
| - | + | ==Crystal structure of a Resiniferatoxin-binding protein from Rhodobacter sphaeroides== | |
| - | + | <StructureSection load='3k2g' size='340' side='right' caption='[[3k2g]], [[Resolution|resolution]] 1.80Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3k2g]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhos4 Rhos4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K2G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K2G FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DTV:(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL'>DTV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RHOS4_37320, RHOS4_37320 (RSP_3690), RSP_3690 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272943 RHOS4])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k2g OCA], [http://pdbe.org/3k2g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k2g RCSB], [http://www.ebi.ac.uk/pdbsum/3k2g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3k2g ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | == | + | Check<jmol> |
| - | + | <jmolCheckbox> | |
| - | [[ | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k2/3k2g_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Burley, S K | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Kumaran, D | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: Swaminathan, S | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k2g ConSurf]. |
| - | + | <div style="clear:both"></div> | |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Rhos4]] | ||
| + | [[Category: Burley, S K]] | ||
| + | [[Category: Kumaran, D]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Swaminathan, S]] | ||
[[Category: Binuclear zinc]] | [[Category: Binuclear zinc]] | ||
| - | [[Category: New | + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] |
| - | + | ||
[[Category: Phosphotriesterase]] | [[Category: Phosphotriesterase]] | ||
[[Category: Resiniferatoxin binding protein]] | [[Category: Resiniferatoxin binding protein]] | ||
[[Category: Resiniferatoxin-binding]] | [[Category: Resiniferatoxin-binding]] | ||
| - | [[Category: Structural genomic]] | ||
[[Category: Tim barrel]] | [[Category: Tim barrel]] | ||
| - | |||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 28 11:04:03 2009'' | ||
Current revision
Crystal structure of a Resiniferatoxin-binding protein from Rhodobacter sphaeroides
| |||||||||||

