This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2zul

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:58, 13 March 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2zul.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of Thermus thermophilus 16S rRNA methyltransferase RsmC (TTHA0533) in complex with cofactor S-adenosyl-L-Methionine==
-
The line below this paragraph, containing "STRUCTURE_2zul", creates the "Structure Box" on the page.
+
<StructureSection load='2zul' size='340' side='right'caption='[[2zul]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2zul]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZUL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZUL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
-
{{STRUCTURE_2zul| PDB=2zul | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zul OCA], [https://pdbe.org/2zul PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zul RCSB], [https://www.ebi.ac.uk/pdbsum/2zul PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zul ProSAT], [https://www.topsan.org/Proteins/RSGI/2zul TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of Thermus thermophilus 16S rRNA methyltransferase RsmC (TTHA0533) in complex with cofactor S-adenosyl-L-Methionine===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q5SKW0_THET8 Q5SKW0_THET8]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2ZUL is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZUL OCA].
+
Check<jmol>
-
[[Category: Thermus thermophilus hb8]]
+
<jmolCheckbox>
-
[[Category: Kawazoe, M.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zu/2zul_consurf.spt"</scriptWhenChecked>
-
[[Category: Naoe, C.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Takemoto, C.]]
+
</jmolCheckbox>
-
[[Category: Tatsuguchi, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zul ConSurf].
-
[[Category: Wang, H.]]
+
<div style="clear:both"></div>
-
[[Category: Yokoyama, S.]]
+
__TOC__
-
[[Category: 16s rrna methyltransferase]]
+
</StructureSection>
-
[[Category: Methyltransferase]]
+
[[Category: Large Structures]]
-
[[Category: National project on protein structural and functional analyse]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Nppsfa]]
+
[[Category: Kawazoe M]]
-
[[Category: Riken structural genomics/proteomics initiative]]
+
[[Category: Naoe C]]
-
[[Category: Rsgi]]
+
[[Category: Takemoto C]]
-
[[Category: S-adenosyl-l-methionine]]
+
[[Category: Tatsuguchi A]]
-
[[Category: Structural genomic]]
+
[[Category: Wang H]]
-
[[Category: Transferase]]
+
[[Category: Yokoyama S]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 28 13:45:41 2009''
+

Current revision

Crystal structure of Thermus thermophilus 16S rRNA methyltransferase RsmC (TTHA0533) in complex with cofactor S-adenosyl-L-Methionine

PDB ID 2zul

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools