3eja

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{{Seed}}
 
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[[Image:3eja.jpg|left|200px]]
 
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==Magnesium-bound glycoside hydrolase 61 isoform E from Thielavia terrestris==
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The line below this paragraph, containing "STRUCTURE_3eja", creates the "Structure Box" on the page.
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<StructureSection load='3eja' size='340' side='right'caption='[[3eja]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3eja]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermothielavioides_terrestris Thermothielavioides terrestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EJA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EJA FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.902&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_3eja| PDB=3eja | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3eja FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3eja OCA], [https://pdbe.org/3eja PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3eja RCSB], [https://www.ebi.ac.uk/pdbsum/3eja PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3eja ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/D0VWZ9_9PEZI D0VWZ9_9PEZI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ej/3eja_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3eja ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Currently, the relatively high cost of enzymes such as glycoside hydrolases that catalyze cellulose hydrolysis represents a barrier to commercialization of a biorefinery capable of producing renewable transportable fuels such as ethanol from abundant lignocellulosic biomass. Among the many families of glycoside hydrolases that catalyze cellulose and hemicellulose hydrolysis, few are more enigmatic than family 61 (GH61), originally classified based on measurement of very weak endo-1,4-beta-d-glucanase activity in one family member. Here we show that certain GH61 proteins lack measurable hydrolytic activity by themselves but in the presence of various divalent metal ions can significantly reduce the total protein loading required to hydrolyze lignocellulosic biomass. We also solved the structure of one highly active GH61 protein and find that it is devoid of conserved, closely juxtaposed acidic side chains that could serve as general proton donor and nucleophile/base in a canonical hydrolytic reaction, and we conclude that the GH61 proteins are unlikely to be glycoside hydrolases. Structure-based mutagenesis shows the importance of several conserved residues for GH61 function. By incorporating the gene for one GH61 protein into a commercial Trichoderma reesei strain producing high levels of cellulolytic enzymes, we are able to reduce by 2-fold the total protein loading (and hence the cost) required to hydrolyze lignocellulosic biomass.
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===Magnesium-bound glycoside hydrolase 61 isoform E from Thielavia terrestris===
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Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family.,Harris PV, Welner D, McFarland KC, Re E, Navarro Poulsen JC, Brown K, Salbo R, Ding H, Vlasenko E, Merino S, Xu F, Cherry J, Larsen S, Lo Leggio L Biochemistry. 2010 Apr 20;49(15):3305-16. PMID:20230050<ref>PMID:20230050</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==About this Structure==
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</div>
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3EJA is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Thielavia_terrestris Thielavia terrestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EJA OCA].
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<div class="pdbe-citations 3eja" style="background-color:#fffaf0;"></div>
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[[Category: Thielavia terrestris]]
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== References ==
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[[Category: Harris, P.]]
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<references/>
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[[Category: Leggio, L Lo.]]
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__TOC__
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[[Category: McFarland, K.]]
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</StructureSection>
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[[Category: Salbo, R.]]
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[[Category: Large Structures]]
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[[Category: Welner, D.]]
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[[Category: Thermothielavioides terrestris]]
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[[Category: Beta sandwich]]
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[[Category: Harris P]]
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[[Category: Fibronectin type iii fold]]
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[[Category: Lo Leggio L]]
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[[Category: Magnesium]]
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[[Category: McFarland K]]
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[[Category: Metal site]]
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[[Category: Salbo R]]
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[[Category: Unknown function]]
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[[Category: Welner D]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 28 13:48:46 2009''
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Current revision

Magnesium-bound glycoside hydrolase 61 isoform E from Thielavia terrestris

PDB ID 3eja

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