2r8e

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{{Seed}}
 
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[[Image:2r8e.png|left|200px]]
 
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==Crystal structure of YrbI from Escherichia coli in complex with Mg==
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The line below this paragraph, containing "STRUCTURE_2r8e", creates the "Structure Box" on the page.
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<StructureSection load='2r8e' size='340' side='right'caption='[[2r8e]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2r8e]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O6 Escherichia coli O6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R8E FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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{{STRUCTURE_2r8e| PDB=2r8e | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r8e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r8e OCA], [https://pdbe.org/2r8e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r8e RCSB], [https://www.ebi.ac.uk/pdbsum/2r8e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r8e ProSAT]</span></td></tr>
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</table>
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===Crystal structure of YrbI from Escherichia coli in complex with Mg===
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== Function ==
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[https://www.uniprot.org/uniprot/KDSC_ECOL6 KDSC_ECOL6] Involved in the biosynthesis of lipopolysaccharides (LPSs) (By similarity). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 19726684 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/2r8e_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_19726684}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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2R8E is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli_o6 Escherichia coli o6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8E OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r8e ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:19726684</ref><references group="xtra"/>
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</StructureSection>
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[[Category: 3-deoxy-manno-octulosonate-8-phosphatase]]
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[[Category: Escherichia coli O6]]
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[[Category: Escherichia coli o6]]
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[[Category: Large Structures]]
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[[Category: Aggarwal, P.]]
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[[Category: Aggarwal P]]
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[[Category: Biswas, T.]]
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[[Category: Biswas T]]
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[[Category: Rubin, J R.]]
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[[Category: Rubin JR]]
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[[Category: Stuckey, J A.]]
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[[Category: Stuckey JA]]
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[[Category: Tsodikov, O V.]]
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[[Category: Tsodikov OV]]
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[[Category: Woodard, R.]]
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[[Category: Woodard R]]
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[[Category: Divalent metal]]
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[[Category: Had superfamily]]
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[[Category: Hydrolase]]
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[[Category: Kdo 8-p]]
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[[Category: Lipopolysaccharide biosynthesis]]
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[[Category: Magnesium]]
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[[Category: Phosphatase]]
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[[Category: Yrbi]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 4 12:05:32 2009''
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Current revision

Crystal structure of YrbI from Escherichia coli in complex with Mg

PDB ID 2r8e

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