1lhz

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(New page: 200px<br /><applet load="1lhz" size="450" color="white" frame="true" align="right" spinBox="true" caption="1lhz, resolution 2.3&Aring;" /> '''Structure of a Human ...)
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[[Image:1lhz.gif|left|200px]]<br /><applet load="1lhz" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1lhz, resolution 2.3&Aring;" />
 
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'''Structure of a Human Bence-Jones Dimer Crystallized in U.S. Space Shuttle Mission STS-95: 293K'''<br />
 
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==Overview==
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==Structure of a Human Bence-Jones Dimer Crystallized in U.S. Space Shuttle Mission STS-95: 293K==
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Crystals of a human (Sea) Bence-Jones dimer were produced in a capillary, by vapor diffusion under microgravity conditions in the 9 day US Space, Shuttle Mission STS-95. In comparison to ground-based experiments, nucleation was facile and spontaneous in space. Appearance of a very large, (8 x 1.6 x 1.0 mm) crystal in a short time period is a strong endorsement, for the use of microgravity to produce crystals sufficiently large for, neutron diffraction studies. The Sea dimer crystallized in the, orthorhombic space group P2(1)2(1)2(1), with a = 48.9 A, b = 85.2 A, and c, = 114.0 A. The crystals grown in microgravity exhibited significantly, lower mosaicities than those of ground-based crystals and the X-ray, diffraction data had a lower overall B factor. Three-dimensional, structures determined by X-ray analysis at two temperatures (100 and 293, K) were indistinguishable from those obtained from ground-based crystals., However, both the crystallographic R factor and the free R factor were, slightly lower in the models derived from crystals produced in, microgravity. The major difference between the two crystal growth systems, is a lack of convection and sedimentation in a microgravity environment., This environment resulted in the growth of much larger, higher-quality, crystals of the Sea Bence-Jones protein. Structurally, heretofore, unrecognized grooves on the external surfaces of the Sea and other, immunoglobulin-derived fragments are regular features and may offer, supplementary binding regions for super antigens and other elongated, ligands in the bloodstream and perivascular tissues.
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<StructureSection load='1lhz' size='340' side='right'caption='[[1lhz]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1lhz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LHZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LHZ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lhz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lhz OCA], [https://pdbe.org/1lhz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lhz RCSB], [https://www.ebi.ac.uk/pdbsum/1lhz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lhz ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q6PJG0_HUMAN Q6PJG0_HUMAN]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lh/1lhz_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lhz ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Crystals of a human (Sea) Bence-Jones dimer were produced in a capillary by vapor diffusion under microgravity conditions in the 9 day US Space Shuttle Mission STS-95. In comparison to ground-based experiments, nucleation was facile and spontaneous in space. Appearance of a very large (8 x 1.6 x 1.0 mm) crystal in a short time period is a strong endorsement for the use of microgravity to produce crystals sufficiently large for neutron diffraction studies. The Sea dimer crystallized in the orthorhombic space group P2(1)2(1)2(1), with a = 48.9 A, b = 85.2 A, and c = 114.0 A. The crystals grown in microgravity exhibited significantly lower mosaicities than those of ground-based crystals and the X-ray diffraction data had a lower overall B factor. Three-dimensional structures determined by X-ray analysis at two temperatures (100 and 293 K) were indistinguishable from those obtained from ground-based crystals. However, both the crystallographic R factor and the free R factor were slightly lower in the models derived from crystals produced in microgravity. The major difference between the two crystal growth systems is a lack of convection and sedimentation in a microgravity environment. This environment resulted in the growth of much larger, higher-quality crystals of the Sea Bence-Jones protein. Structurally, heretofore unrecognized grooves on the external surfaces of the Sea and other immunoglobulin-derived fragments are regular features and may offer supplementary binding regions for super antigens and other elongated ligands in the bloodstream and perivascular tissues.
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==About this Structure==
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Comparison of the three-dimensional structures of a human Bence-Jones dimer crystallized on Earth and aboard US Space Shuttle Mission STS-95.,Terzyan SS, Bourne CR, Ramsland PA, Bourne PC, Edmundson AB J Mol Recognit. 2003 Mar-Apr;16(2):83-90. PMID:12720277<ref>PMID:12720277</ref>
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1LHZ is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1LHZ OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Comparison of the three-dimensional structures of a human Bence-Jones dimer crystallized on Earth and aboard US Space Shuttle Mission STS-95., Terzyan SS, Bourne CR, Ramsland PA, Bourne PC, Edmundson AB, J Mol Recognit. 2003 Mar-Apr;16(2):83-90. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12720277 12720277]
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</div>
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<div class="pdbe-citations 1lhz" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Protein complex]]
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[[Category: Large Structures]]
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[[Category: Bourne, P.C.]]
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[[Category: Bourne PC]]
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[[Category: DeWitt, C.R.]]
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[[Category: DeWitt CR]]
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[[Category: Edmundson, A.B.]]
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[[Category: Edmundson AB]]
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[[Category: Ramsland, P.A.]]
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[[Category: Ramsland PA]]
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[[Category: Terzyan, S.S.]]
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[[Category: Terzyan SS]]
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[[Category: human bence-jones dimer]]
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[[Category: induced fit]]
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[[Category: microgravity crystallization]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 02:59:25 2007''
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Current revision

Structure of a Human Bence-Jones Dimer Crystallized in U.S. Space Shuttle Mission STS-95: 293K

PDB ID 1lhz

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