Proteopedia:Table of Contents

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (22:18, 30 December 2021) (edit) (undo)
 
(245 intermediate revisions not shown.)
Line 1: Line 1:
-
{{#tree:id=siteTree|openlevels=1|root='''Chemistry of Life'''|
+
This guide to the contents of Proteopedia is maintained manually (not automatically generated) and so is inevitably incomplete. Please be sure to use the [[Help:Searching|search slots at the left]] if you don't find what you are looking for below. Updated: {{REVISIONDAY2}}-{{REVISIONMONTH}}-{{REVISIONYEAR}} (DD-MM-YYYY)
-
* INTRODUCTION
+
'''When you create a new page in Proteopedia, please add it to corresponding topic subpages.'''
-
** Introduction to the Chemistry of Life
+
-
** Water
+
-
*** [[Water_in_macromolecular_models]]
+
-
** Key chemical concepts for Structural Biology
+
-
*** [[Cation-pi interactions]]
+
-
*** [[Hydrogen bond]]
+
-
*** [[Hydrogen_in_macromolecular_models]]
+
-
* BIOMOLECULES
+
==Topics Pages Organized by Category==
-
** Nucleotides, Nucleic Acids, and Genetic Information
+
{{#tree:id=OrganizedByTopic|openlevels=0|
-
*** [[DNA]]
+
-
**** [[Z-DNA]]
+
-
** [[Amino_Acids]]
+
-
** Proteins: Primary Structure
+
-
** Proteins: Three-Dimensional Structure
+
-
*** [[S347/The four tiers of protein structure]]
+
-
** Protein Function: Myoglobin and Hemoglobin, Muscle Contraction, and Antibodies
+
-
*** Antibodies
+
-
**** [[IgA]]
+
-
**** [[Epitopes]]
+
-
*** [[Calmodulin_in_motion]]
+
-
*** [[Collagen]]
+
-
*** [[Hemoglobin]]; [[Hemoglobin_(Hebrew)]]
+
-
** COLORED PROTEINS & THOSE THAT CHANGE COLOR
+
-
*** [[Green Fluorescent Protein]]; [[GFP_(Hebrew)]]
+
-
*** [[Dronpa]]*** [[Factor IX]]
+
-
** DNA BINDING PROTEINS
+
-
*** [[Helix-turn-helix motif]]
+
-
*** [[DNA-binding protein VirE2 from Agrobacterium tumefaciens complexed with chaperone VirE1]]
+
-
** Lipids and Biological Membranes
+
-
** Membrane Transport
+
-
*** [[A Physical Model of the β2-Adrenergic Receptor]]
+
-
** Prions & Intrinsically Disordered Proteins
+
-
*** [[Doppel]]
+
-
*** [[Intrinsically Disordered Protein]]
+
-
** Toxins
+
-
*** [[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]]
+
-
** Viruses
+
-
*** Filamentous bacteriphage
+
-
**** [[G3p]] - minor coat protein found on the surface of filamentous bacteriophage
+
-
*** HIV
+
-
**** [[HIV-1_Gag]]
+
-
**** [[HIV-1 Gag Recruitment of Tsg101 and the Viral Budding Process]]
+
-
*** Herpes Simplex Virus
+
-
**** [[Herpes_Simplex_Virus_Thymidine_Kinase]]
+
-
*** Influenzan
+
-
**** [[Influenza_hemagglutinin]]
+
-
* ENZYMES
+
-
** Enzymatic Catalysis
+
-
*** [[Aconitase]]
+
-
*** [[Enzyme I of the Phosphoenolpyruvate:Sugar Phosphotransferase System]]
+
-
*** Serine Hydrolases
+
-
**** [[Acetylcholinesterase]] (AChE)
+
-
***** [[Acetylcholine]]
+
-
***** [[Flexibility_of_aromatic_residues_in_acetylcholinesterase]]
+
-
***** [[AChE inhibitors and substrates]]
+
-
****** [[1eve]] AChE-Aricept complex; [[1eve (Chinese)]]; [[1eve (Russian)]]; [[1eve (Spanish)]]; [[1eve (Turkish)]]
+
-
****** [[AChE_bivalent_inhibitors]]
+
-
***[[Triose_Phosphate_Isomerase]]
+
-
** Enzyme Kinetics, Inhibition, and Control
+
-
** Biochemical Signaling
+
-
* METABOLISM
+
* [[Introduction to protein structure]] - A introductory overview of protein structure.
-
** Introduction to Metabolism
+
* [[About Macromolecular Structure]] - List of pages about macromolecular structure terms and concepts.
-
** Glucose Catabolism
+
* [[Proteopedia:Topic Pages|Topic pages]] - List of pages about specific proteins or protein families.
-
** Glycogen Metabolism and Gluconeogenesis
+
* [[Index pages]] - List of pages that list other pages within Proteopedia.
-
** Citric Acid Cycle
+
* Basics of Protein Structure
-
** Electron Transport and Oxidative Phosphorylation
+
**[[Introduction to protein structure]] - A introductory overview of protein structure
-
** Photosynthesis
+
**[[Proteins: primary and secondary structure]]
-
** Lipid Metabolism
+
**[[Myoglobin of Physeter catodon: structure]]
-
** Amino Acid Metabolism
+
** The Building Blocks
-
** Mammalian Fuel Metabolism: Integration and Regulation
+
*** [[Amino Acids]]
 +
*** [[Backbone_representations]]
 +
*** [[Peptide]]
 +
**** [[User:Stephen Mills/Peptide tutorial 1|Peptide tutorial 1 part 1]]
 +
**** [[User:Stephen Mills/Peptide tutorial 2|Peptide tutorial 1 part 2]]
-
* GENE EXPRESSION AND REPLICATION
+
** Conformational flexibility of a polypeptide chain
-
** Nucleotide Metabolism
+
*** [[Phi and Psi Angles]]
-
** Nucleic Acid Structure
+
*** [[Ramachandran Plots]]
-
** DNA Replication, Repair, and Recombination
+
*** [[Tutorial:Ramachandran principle and phi psi angles]]
-
*** [[DNA Replication,Transcription and Translation]]
+
** [[Secondary structure]]
-
*** [[Fpg_Nei_Protein_Superfamily]] - DNA Repair and Base Excision DNA Repair
+
*** [[Helices in Proteins]]
-
*** [[Human RecQ-Like protein 1]] - RecQ family of DNA helicases are conserved in from bacteria to man
+
**** [[User:Stephen Mills/Secondary Structure: Helices|Secondary Structure tutorial - Helices]]
-
** Transcription and RNA Processing
+
*** [[Sheets in Proteins]]
-
** Protein Synthesis
+
**** [[User:Stephen Mills/Secondary Structure: Sheets|Secondary Structure tutorial - Sheets]]
-
** Regulation of Gene Expression
+
** [[Structural_templates]]
 +
*** [[Globular_Proteins]]
 +
**** [[Turns in Proteins]]
 +
*** [[Fibrous Proteins]]
 +
**** [[Coiled_coil]]
 +
**** [[Collagen]] - Illustrates the structure of a collagen segment as well as the structure of a mutated tropocollagen.
 +
**** [[Fibroins]]
-
* EVOLUTION
 
-
** [[Conservation, Evolutionary]]
 
-
** [[Extremophiles]]
 
-
* METHODS OF STRUCTURE DETERMINATION
+
** [[Unusual Motifs in Proteins]]
-
** X-ray
+
*** [[Cation-pi_interactions]]
-
***[[X-ray_crystallography]]
+
*** [[Thermal_motion_of_peptide]]
-
****[[Asymmetric_Unit]]
+
-
****[[Biological_Unit]]
+
-
****[[Electron_density_maps]]
+
-
***SAXS
+
-
** NMR
+
-
** Electron Microscopy
+
-
* METHODS OF STRUCTURE & SEQUENCE ANALYSIS
+
** [[Intrinsically Disordered Protein]]
-
** STRUCTURAL ANALYSIS & VISUALIZATION
+
 
-
*** [[Chime]]
+
* Carbohydrates
-
*** Jmol
+
**[[Carbohydrates]]
-
**** [[S347/Visualising_protein_structure]] - Introduction to Jmol
+
**[[Carbohydrates II]]
-
**** [[FirstGlance_in_Jmol]]
+
* Cytoskeletal Proteins
-
*** [[User:Wayne Decatur/Teaching Proteopedia]]
+
** [[Actin]]
-
*** [[User:Wayne Decatur/Generate Unfolded Structures]]
+
** [[Keratins]]
-
*** Homology Model
+
** [[Tropomyosin]]
-
**** [[User:Wayne Decatur/Homology Modeling]]
+
** [[Tubulin]]
-
**** [[User:Emi Nakayama/TRIM5a Homology Models]] - Differences in models as a function of their templates
+
 
-
*** [[DRuMS]] - set of standard color schemes for macromolecular visualization
+
* Lipids
-
** SEQUENCE ANALYSIS
+
**[[Lipids: structure and classification]]
-
*** [[User:Wayne Decatur/Sequence analysis tools]]
+
 
 +
* Diseases & Related Topics
 +
** [[Alzheimer's Disease]]
 +
** [[Antibody]]
 +
** [[Bacterial Infections]]
 +
** [[Cancer]]
 +
** [[Coronavirus Disease 2019 (COVID-19)]]
 +
** [[Diabetes & Hypoglycemia]]
 +
** [[Hemophilia]]
 +
** [[HIV]]
 +
** [[Hypertension & Congestive Heart Failure]]
 +
** [[Immune Response]]
 +
** [[Inflammation & Rheumatoid Arthritis]]
 +
** [[Influenza]]
 +
** [[Metabolic Disorders]]
 +
** [[Neurodevelopmental Disorders]]
 +
** [[Oncogenes]]
 +
** [[Pharmaceutical Drugs]]
 +
** [[Pharmaceutical Drug Targets]]
 +
** [[Toxins]]
 +
** [[Viral Infections]]
 +
 
 +
* Enzymes
 +
** [[Hydrolases]]
 +
** [[Isomerases]]
 +
** [[Ligases]]
 +
** [[Lyases]]
 +
** [[Oxidoreductases]]
 +
** [[Transferases]]
 +
 
 +
* Gene Expression & Replication
 +
** [[DNA Replication]]
 +
** [[Nucleic Acids]]
 +
** [[Regulation of Gene Expression]]
 +
** [[RNAi]]
 +
** [[Transcription & RNA Processing]]
 +
** [[Translation]]
 +
 
 +
* Large Macromolecular Assemblies
 +
** [[Group:MUZIC|Muscle sarcomere: Z-Disk]]
 +
** [[Ribosome]]
 +
** [[Ribosoma 70S]]
 +
** [[Nucleosomes]]
 +
** [[Nucleosome structure]]
 +
 
 +
* Metabolism
 +
** [[Amino Acid Synthesis & Metabolism]]
 +
** [[Carbohydrate Metabolism]]
 +
** [[Photosynthesis]]
 +
** [[Regulation of Gene Expression]]
 +
** [[Drug Metabolism by CYP450 Enzymes]]
 +
 
 +
* Miscellaneous
 +
** [[Colored & Bioluminescent Proteins]]
 +
** [[Coronavirus Disease 2019 (COVID-19)]]
 +
** [[Enzimas: complejo enzima-sustrato]]
 +
** [[3D Molecular Models]]
 +
 
 +
* Signaling & Transport
 +
** [[Hormone]]
 +
** [[Membrane Channels & Pumps]]
}}
}}
 +
__NOTOC__
 +
__NOEDITSECTION__

Current revision

This guide to the contents of Proteopedia is maintained manually (not automatically generated) and so is inevitably incomplete. Please be sure to use the search slots at the left if you don't find what you are looking for below. Updated: 30-12-2021 (DD-MM-YYYY)

When you create a new page in Proteopedia, please add it to corresponding topic subpages.

Topics Pages Organized by Category



Retrieved from "http://52.214.119.220/wiki/index.php/Proteopedia:Table_of_Contents"
Personal tools