2wgi

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{{Seed}}
 
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[[Image:2wgi.jpg|left|200px]]
 
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==Crystal structure of the acyl-enzyme OXA-10 W154A-benzylpenicillin at pH 6==
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The line below this paragraph, containing "STRUCTURE_2wgi", creates the "Structure Box" on the page.
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<StructureSection load='2wgi' size='340' side='right'caption='[[2wgi]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2wgi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WGI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WGI FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.85&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PNM:OPEN+FORM+-+PENICILLIN+G'>PNM</scene></td></tr>
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{{STRUCTURE_2wgi| PDB=2wgi | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wgi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wgi OCA], [https://pdbe.org/2wgi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wgi RCSB], [https://www.ebi.ac.uk/pdbsum/2wgi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wgi ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/BLO10_PSEAI BLO10_PSEAI] Hydrolyzes both carbenicillin and oxacillin.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wg/2wgi_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wgi ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The catalytic efficiency of class D OXA-10 beta-lactamase depends critically on an unusual carboxylated lysine as the general base residue for both the enzyme acylation and deacylation steps of catalysis. Evidence is presented that the interaction between the indole group of Trp154 and the carboxylated lysine is essential for the stability of the post-translationally modified Lys70. Substitution of Trp154 by Gly, Ala or Phe yielded non carboxylated enzymes which displayed poor catalytic efficiencies and reduced stability when compared to the wild type OXA-10. The W154H mutant was partially carboxylated. In addition, the maximum values of kcat and kcat/KM were shifted toward pH 7 indicating that the carboxylation state of Lys70 is dependent on the protonation level of the histidine. A comparison of the three dimensional structures of the different proteins also indicated that the Trp154 mutations did not modify the overall structures of OXA-10 but induced an increased flexibility of the omega-loop in the active site. Finally, the deacylation impaired W154A mutant was used to determine the structure of the acyl-enzyme complex with benzylpenicillin. These results indicate a role of the Lys70 carboxylation during the deacylation step and emphasize the importance of Trp154 for the ideal positioning of active site residues leading to an optimum activity.
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===CRYSTAL STRUCTURE OF THE ACYL-ENZYME OXA-10 W154A-BENZYLPENICILLIN AT PH 6===
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Critical role of Tryptophan 154 for the activity and stability of class D beta-lactamases.,Baurin S, Vercheval L, Bouillenne F, Falzone C, Brans A, Jacquamet L, Ferrer JL, Sauvage E, Dehareng D, Frere JM, Charlier P, Galleni M, Kerff F Biochemistry. 2009 Oct 27. PMID:19860471<ref>PMID:19860471</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2wgi" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19860471}}, adds the Publication Abstract to the page
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*[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19860471 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19860471}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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2WGI is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WGI OCA].
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==Reference==
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<ref group="xtra">PMID:19860471</ref><references group="xtra"/>
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[[Category: Beta-lactamase]]
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[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
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[[Category: Charlier, P.]]
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[[Category: Charlier P]]
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[[Category: Falzone, C.]]
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[[Category: Falzone C]]
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[[Category: Galleni, M.]]
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[[Category: Galleni M]]
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[[Category: Herman, R.]]
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[[Category: Herman R]]
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[[Category: Kerff, F.]]
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[[Category: Kerff F]]
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[[Category: Sauvage, E.]]
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[[Category: Sauvage E]]
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[[Category: Vercheval, L.]]
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[[Category: Vercheval L]]
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[[Category: Acyl-enzyme]]
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[[Category: Antibiotic resistance]]
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[[Category: Class d beta-lactamase]]
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[[Category: Hydrolase]]
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[[Category: Hydrolase antibiotic complex]]
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[[Category: Lysine carboxylation]]
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[[Category: Transposable element]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 11 22:15:20 2009''
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Current revision

Crystal structure of the acyl-enzyme OXA-10 W154A-benzylpenicillin at pH 6

PDB ID 2wgi

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