3f2m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:06, 30 October 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3f2m.jpg|left|200px]]
 
-
<!--
+
==Urate oxidase complexed with 8-azaxanthine at 150 MPa==
-
The line below this paragraph, containing "STRUCTURE_3f2m", creates the "Structure Box" on the page.
+
<StructureSection load='3f2m' size='340' side='right'caption='[[3f2m]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3f2m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_flavus Aspergillus flavus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F2M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F2M FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=AZA:8-AZAXANTHINE'>AZA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
{{STRUCTURE_3f2m| PDB=3f2m | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f2m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f2m OCA], [https://pdbe.org/3f2m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f2m RCSB], [https://www.ebi.ac.uk/pdbsum/3f2m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f2m ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/URIC_ASPFL URIC_ASPFL] Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f2/3f2m_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3f2m ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Structure-function relationships in the tetrameric enzyme urate oxidase were investigated using pressure perturbation. As the active sites are located at the interfaces between monomers, enzyme activity is directly related to the integrity of the tetramer. The effect of hydrostatic pressure on the enzyme was investigated by x-ray crystallography, small-angle x-ray scattering, and fluorescence spectroscopy. Enzymatic activity was also measured under pressure and after decompression. A global model, consistent with all measurements, discloses structural and functional details of the pressure-induced dissociation of the tetramer. Before dissociating, the pressurized protein adopts a conformational substate characterized by an expansion of its substrate binding pocket at the expense of a large neighboring hydrophobic cavity. This substate should be adopted by the enzyme during its catalytic mechanism, where the active site has to accommodate larger intermediates and product. The approach, combining several high-pressure techniques, offers a new (to our knowledge) means of exploring structural and functional properties of transient states relevant to protein mechanisms.
-
===Urate oxidase complexed with 8-azaxanthine at 150 MPa===
+
Structure-function perturbation and dissociation of tetrameric urate oxidase by high hydrostatic pressure.,Girard E, Marchal S, Perez J, Finet S, Kahn R, Fourme R, Marassio G, Dhaussy AC, Prange T, Giffard M, Dulin F, Bonnete F, Lange R, Abraini JH, Mezouar M, Colloc'h N Biophys J. 2010 May 19;98(10):2365-73. doi: 10.1016/j.bpj.2010.01.058. PMID:20483346<ref>PMID:20483346</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 3f2m" style="background-color:#fffaf0;"></div>
-
==About this Structure==
+
==See Also==
-
3F2M is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Aspergillus_flavus Aspergillus flavus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F2M OCA].
+
*[[Urate oxidase 3D structures|Urate oxidase 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Aspergillus flavus]]
[[Category: Aspergillus flavus]]
-
[[Category: Urate oxidase]]
+
[[Category: Large Structures]]
-
[[Category: Fourme, R.]]
+
[[Category: Colloc'h N]]
-
[[Category: Girard, E.]]
+
[[Category: Fourme R]]
-
[[Category: Kahn, R.]]
+
[[Category: Girard E]]
-
[[Category: H, N Colloc.]]
+
[[Category: Kahn R]]
-
[[Category: Acetylation]]
+
-
[[Category: High pressure]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Peroxisome]]
+
-
[[Category: Purine metabolism]]
+
-
[[Category: T-fold domain]]
+
-
[[Category: Tetramer]]
+
-
[[Category: Uric acid degradation]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 11 22:19:26 2009''
+

Current revision

Urate oxidase complexed with 8-azaxanthine at 150 MPa

PDB ID 3f2m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools