This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2w21

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:40, 13 December 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2w21.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of the aminoacid kinase domain of the glutamate 5 kinase of Escherichia coli.==
-
The line below this paragraph, containing "STRUCTURE_2w21", creates the "Structure Box" on the page.
+
<StructureSection load='2w21' size='340' side='right'caption='[[2w21]], [[Resolution|resolution]] 2.95&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2w21]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_BL21 Escherichia coli BL21]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W21 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W21 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.95&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2w21| PDB=2w21 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w21 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w21 OCA], [https://pdbe.org/2w21 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w21 RCSB], [https://www.ebi.ac.uk/pdbsum/2w21 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w21 ProSAT]</span></td></tr>
-
 
+
</table>
-
===CRYSTAL STRUCTURE OF THE AMINOACID KINASE DOMAIN OF THE GLUTAMATE 5 KINASE OF ESCHERICHIA COLI.===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/PROB_ECOLI PROB_ECOLI] Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.[HAMAP-Rule:MF_00456]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2W21 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W21 OCA].
+
Check<jmol>
-
[[Category: Escherichia coli]]
+
<jmolCheckbox>
-
[[Category: Glutamate 5-kinase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w2/2w21_consurf.spt"</scriptWhenChecked>
-
[[Category: Cervera, J.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Gil-Ortiz, F.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Marco-Marin, C.]]
+
</jmolCheckbox>
-
[[Category: Perez-Arellano, I.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w21 ConSurf].
-
[[Category: Rubio, V.]]
+
<div style="clear:both"></div>
-
[[Category: Amino acid kinase family]]
+
__TOC__
-
[[Category: Amino-acid biosynthesis]]
+
</StructureSection>
-
[[Category: Cytoplasm]]
+
[[Category: Escherichia coli BL21]]
-
[[Category: Glutamate kinase]]
+
[[Category: Large Structures]]
-
[[Category: Glutamate kinaseamino acid kinase family]]
+
[[Category: Cervera J]]
-
[[Category: Kinase]]
+
[[Category: Gil-Ortiz F]]
-
[[Category: Proline biosynthesis]]
+
[[Category: Marco-Marin C]]
-
[[Category: Transferase]]
+
[[Category: Perez-Arellano I]]
-
 
+
[[Category: Rubio V]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 18 19:51:29 2009''
+

Current revision

Crystal structure of the aminoacid kinase domain of the glutamate 5 kinase of Escherichia coli.

PDB ID 2w21

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools