This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kkb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3kkb", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (09:34, 26 December 2018) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3kkb.jpg|left|200px]]
 
-
<!--
+
==The crystal structure of a two-component sensor domain from Pseudomonas aeruginosa PA01==
-
The line below this paragraph, containing "STRUCTURE_3kkb", creates the "Structure Box" on the page.
+
<StructureSection load='3kkb' size='340' side='right' caption='[[3kkb]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3kkb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KKB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KKB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3kkb| PDB=3kkb | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PA5484, Pseudomonas aeruginosa ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208964 PSEAE])</td></tr>
-
 
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr>
-
===The crystal structure of a two-component sensor domain from Pseudomonas aeruginosa PA01===
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kkb OCA], [http://pdbe.org/3kkb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kkb RCSB], [http://www.ebi.ac.uk/pdbsum/3kkb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kkb ProSAT]</span></td></tr>
-
 
+
</table>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3KKB is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_pao1 Pseudomonas aeruginosa pao1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KKB OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/3kkb_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kkb ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Histidine kinase]]
[[Category: Histidine kinase]]
-
[[Category: Pseudomonas aeruginosa pao1]]
+
[[Category: Pseae]]
-
[[Category: Buck, K.]]
+
[[Category: Buck, K]]
-
[[Category: Chhor, G.]]
+
[[Category: Chhor, G]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Joachimiak, A]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Structural genomic]]
-
[[Category: Tan, K.]]
+
[[Category: Tan, K]]
[[Category: Apc37838 3]]
[[Category: Apc37838 3]]
[[Category: Atp-binding]]
[[Category: Atp-binding]]
Line 27: Line 34:
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Membrane]]
[[Category: Membrane]]
-
[[Category: Midwest center for structural genomic]]
 
[[Category: Nucleotide-binding]]
[[Category: Nucleotide-binding]]
[[Category: Phosphoprotein]]
[[Category: Phosphoprotein]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
[[Category: Pseudomonas aeruginosa pa01]]
[[Category: Pseudomonas aeruginosa pa01]]
-
[[Category: Psi-2]]
 
-
[[Category: Structural genomic]]
 
[[Category: Transferase]]
[[Category: Transferase]]
[[Category: Transmembrane]]
[[Category: Transmembrane]]
[[Category: Two-component sensor]]
[[Category: Two-component sensor]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 18 20:26:45 2009''
 

Current revision

The crystal structure of a two-component sensor domain from Pseudomonas aeruginosa PA01

3kkb, resolution 1.88Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3kkb"
Personal tools