3kmi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3kmi", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (06:24, 27 November 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3kmi.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of putative membrane protein from Clostridium difficile 630==
-
The line below this paragraph, containing "STRUCTURE_3kmi", creates the "Structure Box" on the page.
+
<StructureSection load='3kmi' size='340' side='right'caption='[[3kmi]], [[Resolution|resolution]] 1.96&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3kmi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_630 Clostridioides difficile 630]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KMI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KMI FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.96&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3kmi| PDB=3kmi | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kmi OCA], [https://pdbe.org/3kmi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kmi RCSB], [https://www.ebi.ac.uk/pdbsum/3kmi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kmi ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of putative membrane protein from Clostridium difficile 630===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q184N1_CLOD6 Q184N1_CLOD6]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3KMI is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Clostridium_difficile_630 Clostridium difficile 630]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KMI OCA].
+
Check<jmol>
-
[[Category: Clostridium difficile 630]]
+
<jmolCheckbox>
-
[[Category: Bearden, J.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/3kmi_consurf.spt"</scriptWhenChecked>
-
[[Category: Chang, C.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Joachimiak, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Rakowski, E.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kmi ConSurf].
-
[[Category: Mcsg]]
+
<div style="clear:both"></div>
-
[[Category: Midwest center for structural genomic]]
+
__TOC__
-
[[Category: Protein structure initiative]]
+
</StructureSection>
-
[[Category: Psi-2]]
+
[[Category: Clostridioides difficile 630]]
-
[[Category: Structural genomic]]
+
[[Category: Large Structures]]
-
 
+
[[Category: Bearden J]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 18 20:27:37 2009''
+
[[Category: Chang C]]
 +
[[Category: Joachimiak A]]
 +
[[Category: Rakowski E]]

Current revision

Crystal structure of putative membrane protein from Clostridium difficile 630

PDB ID 3kmi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools