2zon

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{{Seed}}
 
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[[Image:2zon.png|left|200px]]
 
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==Crystal structure of electron transfer complex of nitrite reductase with cytochrome c==
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The line below this paragraph, containing "STRUCTURE_2zon", creates the "Structure Box" on the page.
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<StructureSection load='2zon' size='340' side='right'caption='[[2zon]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2zon]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZON OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZON FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
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{{STRUCTURE_2zon| PDB=2zon | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zon OCA], [https://pdbe.org/2zon PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zon RCSB], [https://www.ebi.ac.uk/pdbsum/2zon PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zon ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/O68601_ALCXX O68601_ALCXX]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zo/2zon_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zon ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Recent earth science studies have pointed out that massive acceleration of the global nitrogen cycle by anthropogenic addition of bio-available nitrogen has led to a host of environmental problems. Nitrous oxide (N(2)O) is a greenhouse gas that is an intermediate during the biological process known as denitrification. Copper-containing nitrite reductase (CuNIR) is a key enzyme in the process; it produces a precursor for N(2)O by catalysing the one-electron reduction of nitrite (NO2-) to nitric oxide (NO). The reduction step is performed by an efficient electron-transfer reaction with a redox-partner protein. However, details of the mechanism during the electron-transfer reaction are still unknown. Here we show the high-resolution crystal structure of the electron-transfer complex for CuNIR with its cognate cytochrome c as the electron donor. The hydrophobic electron-transfer path is formed at the docking interface by desolvation owing to close contact between the two proteins. Structural analysis of the interface highlights an essential role for the loop region with a hydrophobic patch for protein-protein recognition; it also shows how interface construction allows the variation in atomic components to achieve diverse biological electron transfers.
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===Crystal structure of electron transfer complex of nitrite reductase with cytochrome c===
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Structural basis of inter-protein electron transfer for nitrite reduction in denitrification.,Nojiri M, Koteishi H, Nakagami T, Kobayashi K, Inoue T, Yamaguchi K, Suzuki S Nature. 2009 Nov 5;462(7269):117-20. PMID:19890332<ref>PMID:19890332</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2zon" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19890332}}, adds the Publication Abstract to the page
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*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19890332 is the PubMed ID number.
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*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]]
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== References ==
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{{ABSTRACT_PUBMED_19890332}}
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<references/>
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__TOC__
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==About this Structure==
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</StructureSection>
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2ZON is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZON OCA].
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==Reference==
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<ref group="xtra">PMID:19890332</ref><references group="xtra"/>
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[[Category: Achromobacter xylosoxidans]]
[[Category: Achromobacter xylosoxidans]]
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[[Category: Koteishi, H.]]
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[[Category: Large Structures]]
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[[Category: Nojiri, M.]]
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[[Category: Koteishi H]]
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[[Category: Suzuki, S.]]
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[[Category: Nojiri M]]
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[[Category: Yamaguchi, K.]]
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[[Category: Suzuki S]]
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[[Category: Denitrification]]
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[[Category: Yamaguchi K]]
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[[Category: Electron transfer]]
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[[Category: Nitrite]]
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[[Category: Oxidoreductase/electron transport complex]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 18 20:36:03 2009''
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Current revision

Crystal structure of electron transfer complex of nitrite reductase with cytochrome c

PDB ID 2zon

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