This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kgz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:16, 21 February 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3kgz.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of a cupin 2 conserved barrel domain protein from Rhodopseudomonas palustris==
-
The line below this paragraph, containing "STRUCTURE_3kgz", creates the "Structure Box" on the page.
+
<StructureSection load='3kgz' size='340' side='right'caption='[[3kgz]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3kgz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_TIE-1 Rhodopseudomonas palustris TIE-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KGZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KGZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
{{STRUCTURE_3kgz| PDB=3kgz | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kgz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kgz OCA], [https://pdbe.org/3kgz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kgz RCSB], [https://www.ebi.ac.uk/pdbsum/3kgz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kgz ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of a cupin 2 conserved barrel domain protein from Rhodopseudomonas palustris===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/B3QER1_RHOPT B3QER1_RHOPT]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3KGZ is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KGZ OCA].
+
Check<jmol>
-
[[Category: Bacteria]]
+
<jmolCheckbox>
-
[[Category: Almo, S C.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kg/3kgz_consurf.spt"</scriptWhenChecked>
-
[[Category: Bain, K T.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Bonanno, J B.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Burley, S K.]]
+
</jmolCheckbox>
-
[[Category: Do, J.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kgz ConSurf].
-
[[Category: Freeman, J.]]
+
<div style="clear:both"></div>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Romero, R.]]
+
</StructureSection>
-
[[Category: Sauder, J M.]]
+
[[Category: Large Structures]]
-
[[Category: Wasserman, S.]]
+
[[Category: Rhodopseudomonas palustris TIE-1]]
-
[[Category: Metalloprotein]]
+
[[Category: Almo SC]]
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: Bain KT]]
-
[[Category: Nysgxrc]]
+
[[Category: Bonanno JB]]
-
[[Category: Protein structure initiative]]
+
[[Category: Burley SK]]
-
[[Category: Psi-2]]
+
[[Category: Do J]]
-
[[Category: Structural genomic]]
+
[[Category: Freeman J]]
-
 
+
[[Category: Romero R]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 25 10:19:59 2009''
+
[[Category: Sauder JM]]
 +
[[Category: Wasserman S]]

Current revision

Crystal structure of a cupin 2 conserved barrel domain protein from Rhodopseudomonas palustris

PDB ID 3kgz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools