1q7t

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(New page: 200px<br /><applet load="1q7t" size="450" color="white" frame="true" align="right" spinBox="true" caption="1q7t, resolution 1.90&Aring;" /> '''Rv1170 (MshB) from M...)
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[[Image:1q7t.gif|left|200px]]<br /><applet load="1q7t" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1q7t, resolution 1.90&Aring;" />
 
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'''Rv1170 (MshB) from Mycobacterium tuberculosis'''<br />
 
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==Overview==
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==Rv1170 (MshB) from Mycobacterium tuberculosis==
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All living species require protection against the damaging effects of the, reactive oxygen species that are a natural by-product of aerobic life. In, most organisms, glutathione is a critical component of these defences, maintaining a reducing environment inside cells. Some bacteria, however, including pathogenic mycobacteria, use an alternative low molecular mass, thiol compound called mycothiol (MSH) for this purpose. Enzymes that, synthesize MSH are attractive candidates for the design of novel anti-TB, drugs because of the importance of MSH for mycobacterial life and the, absence of such enzymes in humans. We have determined the, three-dimensional structure of MshB (Rv1170), a metal-dependent, deacetylase from Mycobacterium tuberculosis that catalyses the second step, in MSH biosynthesis. The structure, determined at 1.9A resolution by X-ray, crystallography (R=19.0%, R(free)=21.4%), reveals an alpha/beta fold in, which helices pack against a seven-stranded mostly parallel beta-sheet., Large loops emanating from the C termini of the beta-strands enclose a, deep cavity, which is the location of the putative active site. At the, bottom of this cavity is a metal-binding site associated with a sequence, motif AHPDDE that is invariant in all homologues. An adventitiously bound, beta-octylglucoside molecule, used in crystallization, enables us to model, the binding of the true substrate and propose a metal-dependent, mechanistic model for deacetylation. Sequence comparisons indicate that, MshB is representative of a wider family of enzymes that act on, substituted N-acetylglucosamine residues, including a deacetylase involved, in the biosynthesis of glycosylphosphatidylinositol (GPI) anchors in, eukaryotes.
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<StructureSection load='1q7t' size='340' side='right'caption='[[1q7t]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[1q7t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q7T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q7T FirstGlance]. <br>
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1Q7T is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis] with BOG and SO4 as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1Q7T OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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==Reference==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q7t OCA], [https://pdbe.org/1q7t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q7t RCSB], [https://www.ebi.ac.uk/pdbsum/1q7t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q7t ProSAT], [https://www.topsan.org/Proteins/TBSGC/1q7t TOPSAN]</span></td></tr>
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Crystal structure of MshB from Mycobacterium tuberculosis, a deacetylase involved in mycothiol biosynthesis., McCarthy AA, Peterson NA, Knijff R, Baker EN, J Mol Biol. 2004 Jan 23;335(4):1131-41. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=14698305 14698305]
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MSHB_MYCTU MSHB_MYCTU] Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol (MSH) biosynthesis pathway. Shows some amidase activity toward S-conjugates of mycothiol.<ref>PMID:11092856</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q7/1q7t_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q7t ConSurf].
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<div style="clear:both"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Mycobacterium tuberculosis]]
[[Category: Mycobacterium tuberculosis]]
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[[Category: Single protein]]
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[[Category: Baker EN]]
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[[Category: Baker, E.N.]]
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[[Category: Knijff R]]
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[[Category: Knijff, R.]]
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[[Category: McCarthy AA]]
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[[Category: McCarthy, A.A.]]
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[[Category: Peterson NA]]
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[[Category: Peterson, N.A.]]
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[[Category: TBSGC, TB.Structural.Genomics.Consortium.]]
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[[Category: BOG]]
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[[Category: SO4]]
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[[Category: modified rossmann fold]]
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[[Category: protein structure initiative]]
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[[Category: psi]]
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[[Category: structural genomics]]
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[[Category: tb structural genomics consortium]]
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[[Category: tbsgc]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 03:43:05 2007''
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Current revision

Rv1170 (MshB) from Mycobacterium tuberculosis

PDB ID 1q7t

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