This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3k85

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:42, 26 December 2018) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3k85.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of a D-glycero-D-manno-heptose 1-phosphate kinase from Bacteriodes thetaiotaomicron==
-
The line below this paragraph, containing "STRUCTURE_3k85", creates the "Structure Box" on the page.
+
<StructureSection load='3k85' size='340' side='right' caption='[[3k85]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3k85]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_thetaiotaomicron"_distaso_1912 "bacillus thetaiotaomicron" distaso 1912]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K85 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K85 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BT-0704, BT_0474 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 "Bacillus thetaiotaomicron" Distaso 1912])</td></tr>
-
{{STRUCTURE_3k85| PDB=3k85 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k85 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k85 OCA], [http://pdbe.org/3k85 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k85 RCSB], [http://www.ebi.ac.uk/pdbsum/3k85 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3k85 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of a D-glycero-D-manno-heptose 1-phosphate kinase from Bacteriodes thetaiotaomicron===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3K85 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K85 OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k8/3k85_consurf.spt"</scriptWhenChecked>
-
[[Category: Bacteroides thetaiotaomicron]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Burley, S K.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Kumaran, D.]]
+
</jmolCheckbox>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k85 ConSurf].
-
[[Category: Palani, K.]]
+
<div style="clear:both"></div>
-
[[Category: Swaminathan, S.]]
+
__TOC__
-
[[Category: 11277b]]
+
</StructureSection>
 +
[[Category: Bacillus thetaiotaomicron distaso 1912]]
 +
[[Category: Burley, S K]]
 +
[[Category: Kumaran, D]]
 +
[[Category: Structural genomic]]
 +
[[Category: Palani, K]]
 +
[[Category: Swaminathan, S]]
[[Category: Atp-binding]]
[[Category: Atp-binding]]
[[Category: Bacteriodes thetaiotaomicron]]
[[Category: Bacteriodes thetaiotaomicron]]
[[Category: Kinase]]
[[Category: Kinase]]
-
[[Category: New york sgx research center for structural genomic]]
 
[[Category: Nucleotide-binding]]
[[Category: Nucleotide-binding]]
-
[[Category: Nysgxrc]]
+
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-
[[Category: Structural genomic]]
+
[[Category: Transferase]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 9 16:05:04 2009''
+

Current revision

Crystal structure of a D-glycero-D-manno-heptose 1-phosphate kinase from Bacteriodes thetaiotaomicron

3k85, resolution 2.28Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools