3iyd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:07, 21 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3iyd.png|left|200px]]
 
-
<!--
+
==Three-dimensional EM structure of an intact activator-dependent transcription initiation complex==
-
The line below this paragraph, containing "STRUCTURE_3iyd", creates the "Structure Box" on the page.
+
<SX load='3iyd' size='340' side='right' viewer='molstar' caption='[[3iyd]], [[Resolution|resolution]] 19.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3iyd]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IYD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IYD FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 19.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMP:ADENOSINE-3,5-CYCLIC-MONOPHOSPHATE'>CMP</scene></td></tr>
-
{{STRUCTURE_3iyd| PDB=3iyd | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iyd OCA], [https://pdbe.org/3iyd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iyd RCSB], [https://www.ebi.ac.uk/pdbsum/3iyd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iyd ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RPOA_ECOLI RPOA_ECOLI] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. This subunit plays an important role in subunit assembly since its dimerization is the first step in the sequential assembly of subunits to form the holoenzyme.[HAMAP-Rule:MF_00059]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iy/3iyd_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3iyd ConSurf].
 +
<div style="clear:both"></div>
-
===Three-dimensional EM structure of an intact activator-dependent transcription initiation complex===
+
==See Also==
-
 
+
*[[Catabolite gene activator protein 3D structures|Catabolite gene activator protein 3D structures]]
-
 
+
*[[RNA polymerase 3D structures|RNA polymerase 3D structures]]
-
<!--
+
*[[Sigma factor 3D structures|Sigma factor 3D structures]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_19903881}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 19903881 is the PubMed ID number.
+
</SX>
-
-->
+
[[Category: Escherichia coli K-12]]
-
{{ABSTRACT_PUBMED_19903881}}
+
[[Category: Large Structures]]
-
 
+
[[Category: Arnold E]]
-
==About this Structure==
+
[[Category: Berman H]]
-
3IYD is a 10 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IYD OCA].
+
[[Category: Ebright RH]]
-
 
+
[[Category: Hudson BP]]
-
==Reference==
+
[[Category: Kim Y]]
-
<ref group="xtra">PMID:19903881</ref><references group="xtra"/>
+
[[Category: Lara S]]
-
[[Category: DNA-directed RNA polymerase]]
+
[[Category: Lawson CL]]
-
[[Category: Escherichia coli k-12]]
+
[[Category: Quispe J]]
-
[[Category: Arnold, E.]]
+
-
[[Category: Berman, H.]]
+
-
[[Category: Ebright, R H.]]
+
-
[[Category: Hudson, B P.]]
+
-
[[Category: Kim, Y.]]
+
-
[[Category: Lara, S.]]
+
-
[[Category: Lawson, C L.]]
+
-
[[Category: Quispe, J.]]
+
-
[[Category: Acetylation]]
+
-
[[Category: Activator]]
+
-
[[Category: Camp]]
+
-
[[Category: Camp-binding]]
+
-
[[Category: Camp-dependent]]
+
-
[[Category: Cap]]
+
-
[[Category: Class i]]
+
-
[[Category: Crp]]
+
-
[[Category: Dna]]
+
-
[[Category: Dna-binding]]
+
-
[[Category: Dna-directed rna polymerase]]
+
-
[[Category: Holoenzyme]]
+
-
[[Category: Initiation]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Nucleotidyltransferase]]
+
-
[[Category: Open complex]]
+
-
[[Category: Prokaryotic]]
+
-
[[Category: Rna polymerase]]
+
-
[[Category: Sigma factor]]
+
-
[[Category: Sigma70]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription regulation]]
+
-
[[Category: Transcription/dna complex]]
+
-
[[Category: Transferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 16 11:46:49 2009''
+

Current revision

Three-dimensional EM structure of an intact activator-dependent transcription initiation complex

3iyd, resolution 19.80Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3iyd"
Personal tools