This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Template:STRUCTURE 2x06
From Proteopedia
(Difference between revisions)
m (Protected "Template:STRUCTURE 2x06" [edit=sysop:move=sysop]) |
|||
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
{{Structure | {{Structure | ||
| - | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2x06]], resolution 2.50Å (<scene name='initialview01'>default scene</scene>)}}} | + | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2x06]], [[Resolution|resolution]] 2.50Å (<scene name='initialview01'>default scene</scene>)}}} |
|SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+Nad+A+4001'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+Nad+B+4002'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+Nad+C+4003'>AC3</scene>, <scene name='pdbsite=AC4:Binding+Site+For+Residue+Nad+D+4004'>AC4</scene>, <scene name='pdbsite=AC5:Binding+Site+For+Residue+Nad+E+4005'>AC5</scene>, <scene name='pdbsite=AC6:Binding+Site+For+Residue+Nad+F+4006'>AC6</scene>, <scene name='pdbsite=AC7:Binding+Site+For+Residue+Nad+G+4007'>AC7</scene> and <scene name='pdbsite=AC8:Binding+Site+For+Residue+Nad+H+4008'>AC8</scene> | |SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+Nad+A+4001'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+Nad+B+4002'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+Nad+C+4003'>AC3</scene>, <scene name='pdbsite=AC4:Binding+Site+For+Residue+Nad+D+4004'>AC4</scene>, <scene name='pdbsite=AC5:Binding+Site+For+Residue+Nad+E+4005'>AC5</scene>, <scene name='pdbsite=AC6:Binding+Site+For+Residue+Nad+F+4006'>AC6</scene>, <scene name='pdbsite=AC7:Binding+Site+For+Residue+Nad+G+4007'>AC7</scene> and <scene name='pdbsite=AC8:Binding+Site+For+Residue+Nad+H+4008'>AC8</scene> | ||
|LIGAND= <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene> | |LIGAND= <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene> | ||
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/(R)-2-hydroxyacid_dehydrogenase (R)-2-hydroxyacid dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.272 1.1.1.272] </span> | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/(R)-2-hydroxyacid_dehydrogenase (R)-2-hydroxyacid dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.272 1.1.1.272] </span> | ||
| - | |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02615 Ldh_2]</span> | ||
|NONSTDRES=<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene> | |NONSTDRES=<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene> | ||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2x06 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x06 OCA], [http://www.ebi.ac.uk/pdbsum/2x06 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2x06 RCSB]</span> | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2x06 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x06 OCA], [http://www.ebi.ac.uk/pdbsum/2x06 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2x06 RCSB]</span> | ||
| + | |SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003767 Ipr003767]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF02615 PF02615]</span> | ||
| + | |uPDB=2X06|CONSURF={{!}}- | ||
| + | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | ||
| + | {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | ||
| + | {{!}} '''Toggle Conservation Colors:''' | ||
| + | {{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | ||
| + | Rows = identical sequences: | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>A [x]</text> | ||
| + | <name>jmb_2x06_A</name> | ||
| + | <title>toggle chain A</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>B [x]</text> | ||
| + | <name>jmb_2x06_B</name> | ||
| + | <title>toggle chain B</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>C [x]</text> | ||
| + | <name>jmb_2x06_C</name> | ||
| + | <title>toggle chain C</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>D [x]</text> | ||
| + | <name>jmb_2x06_D</name> | ||
| + | <title>toggle chain D</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>E [x]</text> | ||
| + | <name>jmb_2x06_E</name> | ||
| + | <title>toggle chain E</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>F [x]</text> | ||
| + | <name>jmb_2x06_F</name> | ||
| + | <title>toggle chain F</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>G [x]</text> | ||
| + | <name>jmb_2x06_G</name> | ||
| + | <title>toggle chain G</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>H [x]</text> | ||
| + | <name>jmb_2x06_H</name> | ||
| + | <title>toggle chain H</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | |||
}} | }} | ||
Current revision
| |||||||||
| 2x06, resolution 2.50Å () | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Sites: | , , , , , , and | ||||||||
| Ligands: | |||||||||
| Non-Standard Residues: | |||||||||
| Activity: | (R)-2-hydroxyacid dehydrogenase, with EC number 1.1.1.272 | ||||||||
| |||||||||
| |||||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||

