3ksm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (02:02, 21 November 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3ksm.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of ABC-type sugar transport system, periplasmic component from Hahella chejuensis==
-
The line below this paragraph, containing "STRUCTURE_3ksm", creates the "Structure Box" on the page.
+
<StructureSection load='3ksm' size='340' side='right'caption='[[3ksm]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ksm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Hahella_chejuensis_KCTC_2396 Hahella chejuensis KCTC 2396]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KSM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KSM FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BDR:BETA-D-RIBOFURANOSYL'>BDR</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3ksm| PDB=3ksm | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ksm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ksm OCA], [https://pdbe.org/3ksm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ksm RCSB], [https://www.ebi.ac.uk/pdbsum/3ksm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ksm ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of ABC-type sugar transport system, periplasmic component from Hahella chejuensis===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q2S7D2_HAHCH Q2S7D2_HAHCH]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3KSM is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Hahella_chejuensis_kctc_2396 Hahella chejuensis kctc 2396]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KSM OCA].
+
Check<jmol>
-
[[Category: Hahella chejuensis kctc 2396]]
+
<jmolCheckbox>
-
[[Category: Bagaria, A.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/3ksm_consurf.spt"</scriptWhenChecked>
-
[[Category: Burley, S K.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Kumaran, D.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Swaminathan, S.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ksm ConSurf].
-
[[Category: 11023l]]
+
<div style="clear:both"></div>
-
[[Category: Abc-type sugar transport system]]
+
__TOC__
-
[[Category: New york sgx research center for structural genomic]]
+
</StructureSection>
-
[[Category: Nysgxrc]]
+
[[Category: Hahella chejuensis KCTC 2396]]
-
[[Category: Periplasmic component]]
+
[[Category: Large Structures]]
-
[[Category: Protein structure initiative]]
+
[[Category: Bagaria A]]
-
[[Category: Psi-ii]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Kumaran D]]
-
 
+
[[Category: Swaminathan S]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 16 14:34:28 2009''
+

Current revision

Crystal structure of ABC-type sugar transport system, periplasmic component from Hahella chejuensis

PDB ID 3ksm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools