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CPK
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| - | < | + | <StructureSection load='' size='350' side='right' caption='[[Selenocysteine]], colored by element using the CPK color scheme of Jmol: {{Template:ColorKey_Element_C}} {{Template:ColorKey_Element_H}} {{Template:ColorKey_Element_O}} {{Template:ColorKey_Element_N}} {{Template:ColorKey_Element_Se}}' scene='CPK/Selenocysteine_spacefilled/1'> |
| - | < | + | "CPK" stands for Corey-Pauling-Koltun. It commonly refers to spacefilling physical molecular models developed by Corey, Pauling and Koltun<ref>Corey, RB and Pauling L (1953), Molecular models of amino acids, peptides and proteins. Rev. Sci. Instr. 24: 621-627.</ref><ref>PMID: 4158989</ref> in the 1950's and 1960's. ''CPK'' also refers to the color scheme for the elements that they adopted. |
| - | < | + | |
| - | < | + | ==CPK Color Scheme for the Elements== |
| - | [[ | + | In this color scheme, <font color="grey">'''carbon is gray or black'''</font>, <font color="red">'''oxygen is red'''</font>, <font color="blue">'''nitrogen is blue'''</font>, <font color="#c0c000">'''sulfur is yellow'''</font>, and hydrogen is white. |
| - | + | ||
| + | As an example, to the right you see '''[[selenocysteine]]''' and then you can change its rendering with the green links below: | ||
*<scene name='CPK/Selenocysteine_ball_and_stick/2'>Ball and Stick</scene> | *<scene name='CPK/Selenocysteine_ball_and_stick/2'>Ball and Stick</scene> | ||
*<scene name='CPK/Selenocysteine_sticks/1'>Sticks</scene> | *<scene name='CPK/Selenocysteine_sticks/1'>Sticks</scene> | ||
*<scene name='CPK/Selenocysteine_spacefilled/1'>Spacefilling</scene> | *<scene name='CPK/Selenocysteine_spacefilled/1'>Spacefilling</scene> | ||
| - | </td></tr></table> | ||
| - | "CPK" stands for Corey-Pauling-Koltun. It commonly refers to a color scheme for the elements that originated in physical molecular models developed by Corey, Pauling and Koltun<ref>Corey, RB and Pauling L (1953), Molecular models of amino acids, peptides and proteins. Rev. Sci. Instr. 24: 621-627.</ref><ref>PMID: 4158989</ref>. In this color scheme, carbon is gray or black, <font color="red">'''oxygen is red'''</font>, <font color="blue">'''nitrogen is blue'''</font>, and hydrogen is white. The command "color cpk" applies this color scheme in popular molecular visualization programs such as [[RasMol]], [[Chime]], and [[Jmol]]. The complete set of element colors used by Jmol is available at [http://jmol.sourceforge.net/jscolors/ Jmol Colors], where the colors used by RasMol are compared with those used by Jmol. | ||
| + | Another example, '''heme C''': | ||
| + | * <scene name='35/355976/Heme_c_ball_and_stick/1'>Ball and Stick</scene> | ||
| + | * <scene name='35/355976/Heme_c_sticks/1'>Sticks</scene> | ||
| + | * <scene name='35/355976/Heme_c_spacefill/1'>Spacefilling</scene> | ||
| + | |||
| + | ==CPK in Jmol== | ||
| + | The command "color cpk" applies this color scheme in popular molecular visualization programs such as [[RasMol]], [[Chime]], and [[Jmol]]. The complete set of element colors used by Jmol is available at [http://jmol.sourceforge.net/jscolors/ Jmol Colors], where the colors used by RasMol are compared with those used by Jmol. The CPK color scheme for the elements is also incorporated into a standard set of color schemes for macromolecules, [[DRuMS]]. | ||
| + | |||
| + | ==CPK in Proteopedia== | ||
A color key such as the one below can be inserted into Proteopedia using existing templates (see [[Help:Color Keys]]): | A color key such as the one below can be inserted into Proteopedia using existing templates (see [[Help:Color Keys]]): | ||
<br> | <br> | ||
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{{Template:ColorKey_Element_O}} | {{Template:ColorKey_Element_O}} | ||
{{Template:ColorKey_Element_N}} | {{Template:ColorKey_Element_N}} | ||
| + | {{Template:ColorKey_Element_P}} | ||
| + | {{Template:ColorKey_Element_S}} | ||
| + | {{Template:ColorKey_Element_Se}} | ||
| + | {{Template:ColorKey_Element_Fe}} | ||
| + | |||
| + | |||
| + | |||
| + | </StructureSection> | ||
| + | |||
| + | ==References== | ||
| + | <references /> | ||
Current revision
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References
- ↑ Corey, RB and Pauling L (1953), Molecular models of amino acids, peptides and proteins. Rev. Sci. Instr. 24: 621-627.
- ↑ Koltun WL. Precision space-filling atomic models. Biopolymers. 1965 Dec;3(6):665-79. PMID:4158989 doi:http://dx.doi.org/10.1002/bip.360030606
