2w5u

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{{Seed}}
 
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[[Image:2w5u.jpg|left|200px]]
 
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==Flavodoxin from Helicobacter pylori in complex with the C3 inhibitor==
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The line below this paragraph, containing "STRUCTURE_2w5u", creates the "Structure Box" on the page.
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<StructureSection load='2w5u' size='340' side='right'caption='[[2w5u]], [[Resolution|resolution]] 2.62&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2w5u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W5U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W5U FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.62&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=IC3:[2-(5-AMINO-4-CYANO-1H-PYRAZOL-1-YL)-5-(TRIFLUOROMETHYL)PHENYL](HYDROXY)OXOAMMONIUM'>IC3</scene></td></tr>
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{{STRUCTURE_2w5u| PDB=2w5u | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w5u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w5u OCA], [https://pdbe.org/2w5u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w5u RCSB], [https://www.ebi.ac.uk/pdbsum/2w5u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w5u ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/FLAV_HELPY FLAV_HELPY] Low-potential electron donor to a number of redox enzymes (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w5/2w5u_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w5u ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Helicobacter pylori establishes life-long infections in the gastric mucosa of over 1 billion people worldwide. In many cases, without specific antimicrobial intervention, H. pylori infected individuals will develop type B gastritis, chronic peptic ulcers and, more rarely, gastric neoplasias. Conventional antimicrobial therapy has been complicated by dramatic increases in resistance to macrolides, metronidazole and fluoroquinolones. Here, we report the development of novel therapeutics that specifically target the unique flavodoxin component of an essential metabolic pathway of H. pylori. With the use of high-throughput screening methodology, we have tested 10,000 chemicals and have identified 29 compounds that bind flavodoxin, four of which interrupted in vitro electron transfer to flavodoxin physiological partners. Three of these compounds are bactericidal and promisingly selective for H. pylori. The minimal inhibitory concentrations of two of them are 10 times lower than their minimal cytotoxic concentrations for HeLa cells. Importantly, neither of the four inhibitors is toxic for mice after administration of 1-10 mg kg(-1) doses twice a day for 5 days. Enzymatic, thermodynamic and structural characterization of the inhibitor-flavodoxin complexes suggests these compounds could act by modifying the redox potentials of flavodoxin. These newly discovered inhibitors represent promising selective leads against the different diseases associated to H. pylori infection.
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===FLAVODOXIN FROM HELICOBACTER PYLORI IN COMPLEX WITH THE C3 INHIBITOR===
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Discovery of specific flavodoxin inhibitors as potential therapeutic agents against Helicobacter pylori infection.,Cremades N, Velazquez-Campoy A, Martinez-Julvez M, Neira JL, Perez-Dorado I, Hermoso J, Jimenez P, Lanas A, Hoffman PS, Sancho J ACS Chem Biol. 2009 Nov 20;4(11):928-38. PMID:19725577<ref>PMID:19725577</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2w5u" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19725577}}, adds the Publication Abstract to the page
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*[[Flavodoxin 3D structures|Flavodoxin 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19725577 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19725577}}
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__TOC__
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</StructureSection>
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==About this Structure==
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2W5U is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W5U OCA].
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==Reference==
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<ref group="xtra">PMID:19725577</ref><ref group="xtra">PMID:17623845</ref><ref group="xtra">PMID:15752617</ref><references group="xtra"/>
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[[Category: Helicobacter pylori]]
[[Category: Helicobacter pylori]]
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[[Category: Cremades, N.]]
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[[Category: Large Structures]]
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[[Category: Hermoso, J A.]]
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[[Category: Cremades N]]
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[[Category: Martinez-Julvez, M.]]
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[[Category: Hermoso JA]]
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[[Category: Perez-Dorado, I.]]
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[[Category: Martinez-Julvez M]]
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[[Category: Sancho, J.]]
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[[Category: Perez-Dorado I]]
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[[Category: Drug discovery]]
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[[Category: Sancho J]]
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[[Category: Electron transport]]
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[[Category: Flavodoxin]]
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[[Category: Flavoprotein]]
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[[Category: Fmn]]
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[[Category: Protein hinhibitor]]
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[[Category: Transport]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Dec 24 07:34:44 2009''
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Current revision

Flavodoxin from Helicobacter pylori in complex with the C3 inhibitor

PDB ID 2w5u

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