This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ivu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:07, 21 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3ivu.png|left|200px]]
 
-
<!--
+
==Homocitrate Synthase Lys4 bound to 2-OG==
-
The line below this paragraph, containing "STRUCTURE_3ivu", creates the "Structure Box" on the page.
+
<StructureSection load='3ivu' size='340' side='right'caption='[[3ivu]], [[Resolution|resolution]] 2.72&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ivu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IVU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IVU FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.72&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
{{STRUCTURE_3ivu| PDB=3ivu | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ivu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ivu OCA], [https://pdbe.org/3ivu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ivu RCSB], [https://www.ebi.ac.uk/pdbsum/3ivu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ivu ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HOSM_SCHPO HOSM_SCHPO]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iv/3ivu_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ivu ConSurf].
 +
<div style="clear:both"></div>
-
===Homocitrate Synthase Lys4 bound to 2-OG===
+
==See Also==
-
 
+
*[[Homocitrate synthase|Homocitrate synthase]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_19776021}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 19776021 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_19776021}}
+
-
 
+
-
==About this Structure==
+
-
3IVU is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IVU OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:19776021</ref><references group="xtra"/>
+
-
[[Category: Homocitrate synthase]]
+
[[Category: Schizosaccharomyces pombe]]
[[Category: Schizosaccharomyces pombe]]
-
[[Category: Bulfer, S L]]
+
[[Category: Bulfer SL]]
-
[[Category: Couture, J F.]]
+
[[Category: Couture J-F]]
-
[[Category: Pillus, L.]]
+
[[Category: Pillus L]]
-
[[Category: Scott, E M.]]
+
[[Category: Scott EM]]
-
[[Category: Trievel, R C.]]
+
[[Category: Trievel RC]]
-
[[Category: Amino-acid biosynthesis]]
+
-
[[Category: Claisen condensation]]
+
-
[[Category: Lysine biosynthesis]]
+
-
[[Category: Metalloprotein]]
+
-
[[Category: Mitochondrion]]
+
-
[[Category: Tim barrel]]
+
-
[[Category: Transferase]]
+
-
[[Category: Transit peptide]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 30 14:25:03 2009''
+

Current revision

Homocitrate Synthase Lys4 bound to 2-OG

PDB ID 3ivu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ivu"
Personal tools