This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2wzs

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:10, 1 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2wzs.jpg|left|200px]]
 
-
<!--
+
==Structure of the Family GH92 Inverting Mannosidase BT3990 from Bacteroides thetaiotaomicron VPI-5482 in complex with Mannoimidazole==
-
The line below this paragraph, containing "STRUCTURE_2wzs", creates the "Structure Box" on the page.
+
<StructureSection load='2wzs' size='340' side='right'caption='[[2wzs]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2wzs]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_VPI-5482 Bacteroides thetaiotaomicron VPI-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WZS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WZS FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MVL:(5R,6R,7S,8R)-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL'>MVL</scene></td></tr>
-
{{STRUCTURE_2wzs| PDB=2wzs | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wzs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wzs OCA], [https://pdbe.org/2wzs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wzs RCSB], [https://www.ebi.ac.uk/pdbsum/2wzs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wzs ProSAT]</span></td></tr>
-
 
+
</table>
-
===STRUCTURE OF THE FAMILY GH92 INVERTING MANNOSIDASE BT3990 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 IN COMPLEX WITH MANNOIMIDAZOLE===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q8A0N1_BACTN Q8A0N1_BACTN]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2WZS is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WZS OCA].
+
Check<jmol>
-
[[Category: Bacteroides thetaiotaomicron]]
+
<jmolCheckbox>
-
[[Category: Chavan, S.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wz/2wzs_consurf.spt"</scriptWhenChecked>
-
[[Category: Davies, G J.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Dinev, Z.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Dumon, C.]]
+
</jmolCheckbox>
-
[[Category: Gilbert, H J.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wzs ConSurf].
-
[[Category: Moremen, K W.]]
+
<div style="clear:both"></div>
-
[[Category: Siriwardena, A.]]
+
__TOC__
-
[[Category: Smith, N.]]
+
</StructureSection>
-
[[Category: Suits, M D.L.]]
+
[[Category: Bacteroides thetaiotaomicron VPI-5482]]
-
[[Category: Thompson, A.]]
+
[[Category: Large Structures]]
-
[[Category: Williams, S J.]]
+
[[Category: Chavan S]]
-
[[Category: Xiang, Y.]]
+
[[Category: Davies GJ]]
-
[[Category: Zhu, Y.]]
+
[[Category: Dinev Z]]
-
[[Category: 2 linkage]]
+
[[Category: Dumon C]]
-
[[Category: Alpha-1\]]
+
[[Category: Gilbert HJ]]
-
[[Category: Bt3990]]
+
[[Category: Moremen KW]]
-
[[Category: Glycoside hydrolase family 92]]
+
[[Category: Siriwardena A]]
-
[[Category: Hydrolase]]
+
[[Category: Smith N]]
-
 
+
[[Category: Suits MDL]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 30 14:41:52 2009''
+
[[Category: Thompson A]]
 +
[[Category: Williams SJ]]
 +
[[Category: Xiang Y]]
 +
[[Category: Zhu Y]]

Current revision

Structure of the Family GH92 Inverting Mannosidase BT3990 from Bacteroides thetaiotaomicron VPI-5482 in complex with Mannoimidazole

PDB ID 2wzs

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools