This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kwx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:18, 1 November 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3kwx.jpg|left|200px]]
 
-
<!--
+
==Chemically modified Taka alpha-amylase==
-
The line below this paragraph, containing "STRUCTURE_3kwx", creates the "Structure Box" on the page.
+
<StructureSection load='3kwx' size='340' side='right'caption='[[3kwx]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3kwx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_oryzae Aspergillus oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KWX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KWX FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
{{STRUCTURE_3kwx| PDB=3kwx | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kwx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kwx OCA], [https://pdbe.org/3kwx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kwx RCSB], [https://www.ebi.ac.uk/pdbsum/3kwx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kwx ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AMYA1_ASPOR AMYA1_ASPOR]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kw/3kwx_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kwx ConSurf].
 +
<div style="clear:both"></div>
-
===Chemically modified Taka alpha-amylase===
+
==See Also==
-
 
+
*[[Amylase 3D structures|Amylase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3KWX is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Aspergillus_oryzae Aspergillus oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KWX OCA].
+
-
[[Category: Alpha-amylase]]
+
[[Category: Aspergillus oryzae]]
[[Category: Aspergillus oryzae]]
-
[[Category: Burg, D.]]
+
[[Category: Large Structures]]
-
[[Category: Cavicchioli, R.]]
+
[[Category: Burg D]]
-
[[Category: Francisci, D De.]]
+
[[Category: Cavicchioli R]]
-
[[Category: Guerriero, G.]]
+
[[Category: De Francisci D]]
-
[[Category: Harrop, S J.]]
+
[[Category: Guerriero G]]
-
[[Category: Parkin, D M.]]
+
[[Category: Harrop SJ]]
-
[[Category: Pilak, O.]]
+
[[Category: Parkin DM]]
-
[[Category: Poljak, A.]]
+
[[Category: Pilak O]]
-
[[Category: Raftery, M J.]]
+
[[Category: Poljak A]]
-
[[Category: Siddiqui, K S.]]
+
[[Category: Raftery MJ]]
-
[[Category: Trewhella, J.]]
+
[[Category: Siddiqui KS]]
-
[[Category: 4-alpha-d-glucan glucanohydrolase]]
+
[[Category: Trewhella J]]
-
[[Category: Argininemethylester]]
+
-
[[Category: Calcium]]
+
-
[[Category: Carbohydrate metabolism]]
+
-
[[Category: Chemical modification]]
+
-
[[Category: Disulfide bond]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Glycosidase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Metal-binding]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 30 14:47:02 2009''
+

Current revision

Chemically modified Taka alpha-amylase

PDB ID 3kwx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3kwx"
Personal tools