2zxo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:01, 1 November 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2zxo.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of RecJ from Thermus thermophilus HB8==
-
The line below this paragraph, containing "STRUCTURE_2zxo", creates the "Structure Box" on the page.
+
<StructureSection load='2zxo' size='340' side='right'caption='[[2zxo]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2zxo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZXO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZXO FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zxo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zxo OCA], [https://pdbe.org/2zxo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zxo RCSB], [https://www.ebi.ac.uk/pdbsum/2zxo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zxo ProSAT]</span></td></tr>
-
{{STRUCTURE_2zxo| PDB=2zxo | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RECJ_THET8 RECJ_THET8] Single-stranded-DNA-specific exonuclease acting in a 5' to 3' direction; has no detectable activity on ssRNA.<ref>PMID:21087930</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zx/2zxo_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zxo ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
RecJ is a single-stranded DNA (ssDNA)-specific 5'-3' exonuclease that plays an important role in DNA repair and recombination. To elucidate how RecJ achieves its high specificity for ssDNA, we determined the entire structures of RecJ both in a ligand-free form and in a complex with Mn(2+) or Mg(2+) by x-ray crystallography. The entire RecJ consists of four domains that form a molecule with an O-like structure. One of two newly identified domains had structural similarities to an oligonucleotide/oligosaccharide-binding (OB) fold. The OB fold domain alone could bind to DNA, indicating that this domain is a novel member of the OB fold superfamily. The truncated RecJ containing only the core domain exhibited much lower affinity for the ssDNA substrate compared with intact RecJ. These results support the hypothesis that these structural features allow specific binding of RecJ to ssDNA. In addition, the structure of the RecJ-Mn(2+) complex suggests that the hydrolysis reaction catalyzed by RecJ proceeds through a two-metal ion mechanism.
-
===Crystal structure of RecJ from Thermus thermophilus HB8===
+
Structure of RecJ exonuclease defines its specificity for single-stranded DNA.,Wakamatsu T, Kitamura Y, Kotera Y, Nakagawa N, Kuramitsu S, Masui R J Biol Chem. 2010 Mar 26;285(13):9762-9. Epub 2010 Feb 2. PMID:20129927<ref>PMID:20129927</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2zxo" style="background-color:#fffaf0;"></div>
-
==About this Structure==
+
==See Also==
-
2ZXO is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZXO OCA].
+
*[[Exonuclease 3D structures|Exonuclease 3D structures]]
-
[[Category: Thermus thermophilus]]
+
== References ==
-
[[Category: Kitamura, Y.]]
+
<references/>
-
[[Category: Kuramitsu, S.]]
+
__TOC__
-
[[Category: Masui, R.]]
+
</StructureSection>
-
[[Category: Nakagawa, N.]]
+
[[Category: Large Structures]]
-
[[Category: Wakamatsu, T.]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Dna repair]]
+
[[Category: Kitamura Y]]
-
[[Category: Exonuclease]]
+
[[Category: Kuramitsu S]]
-
[[Category: Hydrolase]]
+
[[Category: Masui R]]
-
[[Category: Nuclease]]
+
[[Category: Nakagawa N]]
-
[[Category: Single-stranded dna]]
+
[[Category: Wakamatsu T]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 6 09:33:26 2010''
+

Current revision

Crystal structure of RecJ from Thermus thermophilus HB8

PDB ID 2zxo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2zxo"
Personal tools