1v4l

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(New page: 200px<br /><applet load="1v4l" size="450" color="white" frame="true" align="right" spinBox="true" caption="1v4l, resolution 2.8&Aring;" /> '''Crystal structure of ...)
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[[Image:1v4l.jpg|left|200px]]<br /><applet load="1v4l" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1v4l, resolution 2.8&Aring;" />
 
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'''Crystal structure of a platelet agglutination factor isolated from the venom of Taiwan habu (Trimeresurus mucrosquamatus)'''<br />
 
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==Overview==
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==Crystal structure of a platelet agglutination factor isolated from the venom of Taiwan habu (Trimeresurus mucrosquamatus)==
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Platelet glycoprotein Ib (GPIb)-binding proteins (GPIb-BPs) from snake, venoms are usually C-type lectins, which target specific sites of, GPIbalpha and elicit distinct effects on platelets. In the present paper, we report a tetrameric platelet-agglutinating factor (molecular mass 121.1, kDa), termed mucrocetin, purified from the venom of Taiwan habu, (Trimeresurus mucrosquamatus ). Mucrocetin is a GPIbalpha agonist with a, binding site distinct from that of flavocetin-A (a snake venom GPIbalpha, antagonist) on GPIbalpha, in spite of the high sequence identity (94.6%), between the two venom lectins. The crystal structure of mucrocetin was, solved and refined to 2.8 A (1 A=0.1 nm) resolution, which shows an, interesting crystal packing of six-layer cylinders of doughnut-shaped, molecules. The four alphabeta heterodimers are arranged in an unusual, square-shaped ring stabilized by four interdimer 'head-to-tail' disulphide, bridges. Detailed structural comparison between mucrocetin and, flavocetin-A suggests that their disparate platelet effects are probably, attributable to different charge distributions on the putative concave, binding surface. A unique positively charged patch on the binding surface, of mucrocetin, formed by Lys102, Lys108, Lys109 and Arg123 in the, alpha-subunit coupled with Lys22, Lys102, Lys116 and Arg117 in the, beta-subunit, appears to be the primary determinant of its, platelet-agglutinating activity. Conceivably, this interesting venom, factor may provide a useful tool to study platelet agglutination by, binding to the GPIb-IX-V complex.
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<StructureSection load='1v4l' size='340' side='right'caption='[[1v4l]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1v4l]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Protobothrops_mucrosquamatus Protobothrops mucrosquamatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V4L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V4L FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v4l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v4l OCA], [https://pdbe.org/1v4l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v4l RCSB], [https://www.ebi.ac.uk/pdbsum/1v4l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v4l ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SLOA_PROMU SLOA_PROMU]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v4/1v4l_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v4l ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Platelet glycoprotein Ib (GPIb)-binding proteins (GPIb-BPs) from snake venoms are usually C-type lectins, which target specific sites of GPIbalpha and elicit distinct effects on platelets. In the present paper, we report a tetrameric platelet-agglutinating factor (molecular mass 121.1 kDa), termed mucrocetin, purified from the venom of Taiwan habu (Trimeresurus mucrosquamatus ). Mucrocetin is a GPIbalpha agonist with a binding site distinct from that of flavocetin-A (a snake venom GPIbalpha antagonist) on GPIbalpha, in spite of the high sequence identity (94.6%) between the two venom lectins. The crystal structure of mucrocetin was solved and refined to 2.8 A (1 A=0.1 nm) resolution, which shows an interesting crystal packing of six-layer cylinders of doughnut-shaped molecules. The four alphabeta heterodimers are arranged in an unusual square-shaped ring stabilized by four interdimer 'head-to-tail' disulphide bridges. Detailed structural comparison between mucrocetin and flavocetin-A suggests that their disparate platelet effects are probably attributable to different charge distributions on the putative concave binding surface. A unique positively charged patch on the binding surface of mucrocetin, formed by Lys102, Lys108, Lys109 and Arg123 in the alpha-subunit coupled with Lys22, Lys102, Lys116 and Arg117 in the beta-subunit, appears to be the primary determinant of its platelet-agglutinating activity. Conceivably, this interesting venom factor may provide a useful tool to study platelet agglutination by binding to the GPIb-IX-V complex.
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==About this Structure==
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Crystal structure of a platelet-agglutinating factor isolated from the venom of Taiwan habu (Trimeresurus mucrosquamatus).,Huang KF, Ko TP, Hung CC, Chu J, Wang AH, Chiou SH Biochem J. 2004 Mar 1;378(Pt 2):399-407. PMID:14613481<ref>PMID:14613481</ref>
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1V4L is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Protobothrops_mucrosquamatus Protobothrops mucrosquamatus]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1V4L OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of a platelet-agglutinating factor isolated from the venom of Taiwan habu (Trimeresurus mucrosquamatus)., Huang KF, Ko TP, Hung CC, Chu J, Wang AH, Chiou SH, Biochem J. 2004 Mar 1;378(Pt 2):399-407. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=14613481 14613481]
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</div>
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[[Category: Protein complex]]
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<div class="pdbe-citations 1v4l" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Protobothrops mucrosquamatus]]
[[Category: Protobothrops mucrosquamatus]]
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[[Category: Huang, K.F.]]
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[[Category: Huang K-F]]
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[[Category: Ko, T.P.]]
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[[Category: Ko T-P]]
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[[Category: Wang, A.H.J.]]
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[[Category: Wang AH-J]]
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[[Category: lectin-like]]
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[[Category: square-shaped ring]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 04:35:48 2007''
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Current revision

Crystal structure of a platelet agglutination factor isolated from the venom of Taiwan habu (Trimeresurus mucrosquamatus)

PDB ID 1v4l

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