3l1n

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{{Seed}}
 
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[[Image:3l1n.jpg|left|200px]]
 
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==Crystal structure of Mp1p ligand binding domain 2 complexd with palmitic acid==
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The line below this paragraph, containing "STRUCTURE_3l1n", creates the "Structure Box" on the page.
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<StructureSection load='3l1n' size='340' side='right'caption='[[3l1n]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3l1n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_18224 Atcc 18224]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L1N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L1N FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_3l1n| PDB=3l1n | SCENE= }}
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MP1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37727 ATCC 18224])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l1n OCA], [https://pdbe.org/3l1n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l1n RCSB], [https://www.ebi.ac.uk/pdbsum/3l1n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l1n ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l1/3l1n_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l1n ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Penicillium marneffei is a dimorphic, pathogenic fungus in Southeast Asia that mostly afflicts immunocompromised individuals. As the only dimorphic member of the genus, it goes through a phase transition from a mold to yeast form, which is believed to be a requisite for its pathogenicity. Mp1p, a cell wall antigenic mannoprotein existing widely in yeast, hyphae, and conidia of the fungus, plays a vital role in host immune response during infection. To understand the function of Mp1p, we have determined the x-ray crystal structure of its ligand binding domain 2 (LBD2) to 1.3 A. The structure reveals a dimer between the two molecules. The dimer interface forms a ligand binding cavity, in which electron density was observed for a palmitic acid molecule interacting with LBD2 indirectly through hydrogen bonding networks via two structural water molecules. Isothermal titration calorimetry experiments measured the ligand binding affinity (K(d)) of Mp1p at the micromolar level. Mutations of ligand-binding residues, namely S313A and S332A, resulted in a 9-fold suppression of ligand binding affinity. Analytical ultracentrifugation assays demonstrated that both LBD2 and Mp1p are mostly monomeric in vitro, no matter with or without ligand, and our dimeric crystal structure of LBD2 might be the result of crystal packing. Based on the conformation of the ligand-binding pocket in the dimer structure, a model for the closed, monomeric form of LBD2 is proposed. Further structural analysis indicated the biological importance of fatty acid binding of Mp1p for the survival and pathogenicity of the conditional pathogen.
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===Crystal structure of Mp1p ligand binding domain 2 complexd with palmitic acid===
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Crystal structure of the Mp1p ligand binding domain 2 reveals its function as a fatty acid-binding protein.,Liao S, Tung ET, Zheng W, Chong K, Xu Y, Dai P, Guo Y, Bartlam M, Yuen KY, Rao Z J Biol Chem. 2010 Mar 19;285(12):9211-20. Epub 2010 Jan 6. PMID:20053994<ref>PMID:20053994</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==About this Structure==
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</div>
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3L1N is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Penicillium_marneffei Penicillium marneffei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L1N OCA].
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<div class="pdbe-citations 3l1n" style="background-color:#fffaf0;"></div>
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[[Category: Penicillium marneffei]]
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== References ==
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[[Category: Bartlam, M.]]
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<references/>
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[[Category: Chong, K.]]
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__TOC__
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[[Category: Liao, S.]]
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</StructureSection>
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[[Category: Rao, Z H.]]
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[[Category: Atcc 18224]]
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[[Category: Tung, E K.]]
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[[Category: Large Structures]]
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[[Category: Xu, Y.]]
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[[Category: Bartlam, M]]
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[[Category: Yuen, K Y.]]
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[[Category: Chong, K]]
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[[Category: Zheng, W.]]
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[[Category: Liao, S]]
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[[Category: Rao, Z]]
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[[Category: Tung, E T]]
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[[Category: Xu, Y]]
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[[Category: Yuen, K Y]]
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[[Category: Zheng, W]]
[[Category: Helix-turn-helix]]
[[Category: Helix-turn-helix]]
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[[Category: Lipid binding protein]]
[[Category: Protein-ligand complex]]
[[Category: Protein-ligand complex]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 6 09:38:14 2010''
 

Current revision

Crystal structure of Mp1p ligand binding domain 2 complexd with palmitic acid

PDB ID 3l1n

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