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1v4p
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1v4p" size="450" color="white" frame="true" align="right" spinBox="true" caption="1v4p, resolution 1.45Å" /> '''Crystal structure of...) |
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| - | [[Image:1v4p.gif|left|200px]]<br /><applet load="1v4p" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1v4p, resolution 1.45Å" /> | ||
| - | '''Crystal structure of Alanyl-tRNA Synthetase from Pyrococcus horikoshii OT3'''<br /> | ||
| - | == | + | ==Crystal structure of Alanyl-tRNA Synthetase from Pyrococcus horikoshii OT3== |
| - | + | <StructureSection load='1v4p' size='340' side='right'caption='[[1v4p]], [[Resolution|resolution]] 1.45Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[1v4p]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V4P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V4P FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v4p OCA], [https://pdbe.org/1v4p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v4p RCSB], [https://www.ebi.ac.uk/pdbsum/1v4p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v4p ProSAT], [https://www.topsan.org/Proteins/RSGI/1v4p TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/ALAXS_PYRHO ALAXS_PYRHO] Functions in trans to edit the amino acid moiety from mischarged charged Ser-tRNA(Ala). Has little activity against Gly-tRNA(Ala). | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v4/1v4p_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v4p ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | == | + | ==See Also== |
| - | + | *[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]] | |
| - | [[Category: | + | __TOC__ |
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Pyrococcus horikoshii]] | [[Category: Pyrococcus horikoshii]] | ||
| - | + | [[Category: Ishijima J]] | |
| - | [[Category: Ishijima | + | [[Category: Yutani K]] |
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| - | [[Category: Yutani | + | |
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Current revision
Crystal structure of Alanyl-tRNA Synthetase from Pyrococcus horikoshii OT3
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