1yvf

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(New page: 200px<br /><applet load="1yvf" size="450" color="white" frame="true" align="right" spinBox="true" caption="1yvf, resolution 2.500&Aring;" /> '''Hepatitis C virus N...)
Current revision (09:00, 14 February 2024) (edit) (undo)
 
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[[Image:1yvf.gif|left|200px]]<br /><applet load="1yvf" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1yvf, resolution 2.500&Aring;" />
 
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'''Hepatitis C virus NS5B RNA-dependent RNA polymerase complex with inhibitor PHA-00729145'''<br />
 
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==Overview==
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==Hepatitis C virus NS5B RNA-dependent RNA polymerase complex with inhibitor PHA-00729145==
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A novel series of nonnucleoside HCV NS5B polymerase inhibitors were, prepared from (2Z)-2-(benzoylamino)-3-(5-phenyl-2-furyl)acrylic acid, a, high throughput screening lead. SAR studies combined with structure based, drug design focusing on the southern heterobiaryl region of the template, led to the synthesis of several potent and orally bioavailable lead, compounds. X-ray crystallography studies were also performed to understand, the interaction of these inhibitors with HCV NS5B polymerase.
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<StructureSection load='1yvf' size='340' side='right'caption='[[1yvf]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[1yvf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Hepacivirus_C Hepacivirus C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YVF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YVF FirstGlance]. <br>
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1YVF is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Hepatitis_c_virus Hepatitis c virus] with PO4, CL, PH7 and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/RNA-directed_RNA_polymerase RNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.48 2.7.7.48] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1YVF OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PH7:(2Z)-2-(BENZOYLAMINO)-3-[4-(2-BROMOPHENOXY)PHENYL]-2-PROPENOIC+ACID'>PH7</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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==Reference==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yvf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yvf OCA], [https://pdbe.org/1yvf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yvf RCSB], [https://www.ebi.ac.uk/pdbsum/1yvf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yvf ProSAT]</span></td></tr>
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Inhibitors of HCV NS5B polymerase. Part 1: Evaluation of the southern region of (2Z)-2-(benzoylamino)-3-(5-phenyl-2-furyl)acrylic acid., Pfefferkorn JA, Greene ML, Nugent RA, Gross RJ, Mitchell MA, Finzel BC, Harris MS, Wells PA, Shelly JA, Anstadt RA, Kilkuskie RE, Kopta LA, Schwende FJ, Bioorg Med Chem Lett. 2005 May 16;15(10):2481-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15863301 15863301]
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</table>
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[[Category: Hepatitis c virus]]
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== Function ==
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[[Category: Protein complex]]
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[https://www.uniprot.org/uniprot/O93077_9HEPC O93077_9HEPC]
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[[Category: RNA-directed RNA polymerase]]
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== Evolutionary Conservation ==
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[[Category: Anstadt, R.A.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Finzel, B.C.]]
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Check<jmol>
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[[Category: Greene, M.L.]]
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<jmolCheckbox>
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[[Category: Gross, R.J.]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yv/1yvf_consurf.spt"</scriptWhenChecked>
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[[Category: Harris, M.S.]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Kilkuskie, R.E.]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Kopta, L.A.]]
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</jmolCheckbox>
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[[Category: Mitchell, M.A.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yvf ConSurf].
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[[Category: Nugent, R.A.]]
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<div style="clear:both"></div>
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[[Category: Pfefferkorn, J.A.]]
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__TOC__
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[[Category: Schwende, F.J.]]
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</StructureSection>
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[[Category: Shelly, J.A.]]
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[[Category: Hepacivirus C]]
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[[Category: Wells, P.A.]]
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[[Category: Large Structures]]
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[[Category: CL]]
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[[Category: Anstadt RA]]
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[[Category: GOL]]
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[[Category: Finzel BC]]
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[[Category: PH7]]
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[[Category: Greene ML]]
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[[Category: PO4]]
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[[Category: Gross RJ]]
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[[Category: fingers]]
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[[Category: Harris MS]]
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[[Category: hcv]]
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[[Category: Kilkuskie RE]]
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[[Category: ns5b]]
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[[Category: Kopta LA]]
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[[Category: palm]]
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[[Category: Mitchell MA]]
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[[Category: polymerase]]
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[[Category: Nugent RA]]
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[[Category: thumb]]
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[[Category: Pfefferkorn JA]]
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[[Category: Schwende FJ]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 04:36:08 2007''
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[[Category: Shelly JA]]
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[[Category: Wells PA]]

Current revision

Hepatitis C virus NS5B RNA-dependent RNA polymerase complex with inhibitor PHA-00729145

PDB ID 1yvf

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