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3i6s

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{{Seed}}
 
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[[Image:3i6s.jpg|left|200px]]
 
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==Crystal Structure of the plant subtilisin-like protease SBT3==
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The line below this paragraph, containing "STRUCTURE_3i6s", creates the "Structure Box" on the page.
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<StructureSection load='3i6s' size='340' side='right'caption='[[3i6s]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3i6s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_lycopersicum Solanum lycopersicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I6S OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3I6S FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3i6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i6s OCA], [http://pdbe.org/3i6s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3i6s RCSB], [http://www.ebi.ac.uk/pdbsum/3i6s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3i6s ProSAT]</span></td></tr>
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{{STRUCTURE_3i6s| PDB=3i6s | SCENE= }}
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i6/3i6s_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i6s ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Subtilases are serine proteases found in Archae, Bacteria, yeasts, and higher eukaryotes. Plants possess many more of these subtilisin-like endopeptidases than animals, e.g., 56 identified genes in Arabidopsis compared with only 9 in humans, indicating important roles for subtilases in plant biology. We report the first structure of a plant subtilase, SBT3 from tomato, in the active apo form and complexed with a chloromethylketone (cmk) inhibitor. The domain architecture comprises an N-terminal protease domain displaying a 132 aa protease-associated (PA) domain insertion and a C-terminal seven-stranded jelly-roll fibronectin (Fn) III-like domain. We present the first structural evidence for an explicit function of PA domains in proteases revealing a vital role in the homo-dimerization of SBT3 and in enzyme activation. Although Ca(2+)-binding sites are conserved and critical for stability in other subtilases, SBT3 was found to be Ca(2+)-free and its thermo stability is Ca(2+)-independent.
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===Crystal Structure of the plant subtilisin-like protease SBT3===
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Structural basis for Ca2+-independence and activation by homodimerization of tomato subtilase 3.,Ottmann C, Rose R, Huttenlocher F, Cedzich A, Hauske P, Kaiser M, Huber R, Schaller A Proc Natl Acad Sci U S A. 2009 Oct 6;106(40):17223-8. Epub 2009 Sep 23. PMID:19805099<ref>PMID:19805099</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<!--
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_19805099}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3i6s" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 19805099 is the PubMed ID number.
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== References ==
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-->
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<references/>
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{{ABSTRACT_PUBMED_19805099}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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3I6S is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Solanum_lycopersicum Solanum lycopersicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I6S OCA].
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==Reference==
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<ref group="xtra">PMID:19805099</ref><references group="xtra"/>
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[[Category: Solanum lycopersicum]]
[[Category: Solanum lycopersicum]]
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[[Category: Ottmann, C.]]
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[[Category: Ottmann, C]]
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[[Category: Rose, R.]]
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[[Category: Rose, R]]
[[Category: Fn3-domain]]
[[Category: Fn3-domain]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
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[[Category: Protease]]
[[Category: Protease]]
[[Category: Subtilisin-like]]
[[Category: Subtilisin-like]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 20 15:48:53 2010''
 

Current revision

Crystal Structure of the plant subtilisin-like protease SBT3

PDB ID 3i6s

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