This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3k2n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:06, 17 July 2019) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3k2n.jpg|left|200px]]
 
-
<!--
+
==The crystal structure of sigma-54-dependent transcriptional regulator domain from Chlorobium Tepidum TLS==
-
The line below this paragraph, containing "STRUCTURE_3k2n", creates the "Structure Box" on the page.
+
<StructureSection load='3k2n' size='340' side='right'caption='[[3k2n]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3k2n]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlte Chlte]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K2N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K2N FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CT0108, GAF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=194439 CHLTE])</td></tr>
-
{{STRUCTURE_3k2n| PDB=3k2n | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k2n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k2n OCA], [http://pdbe.org/3k2n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k2n RCSB], [http://www.ebi.ac.uk/pdbsum/3k2n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3k2n ProSAT]</span></td></tr>
-
 
+
</table>
-
===The crystal structure of sigma-54-dependent transcriptional regulator domain from Chlorobium Tepidum TLS===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3K2N is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Chlorobium_tepidum_tls Chlorobium tepidum tls]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K2N OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k2/3k2n_consurf.spt"</scriptWhenChecked>
-
[[Category: Chlorobium tepidum tls]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Clancy, S.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joachimiak, A.]]
+
</jmolCheckbox>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k2n ConSurf].
-
[[Category: Wu, R.]]
+
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Chlte]]
 +
[[Category: Large Structures]]
 +
[[Category: Clancy, S]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Wu, R]]
[[Category: Atp-binding]]
[[Category: Atp-binding]]
[[Category: Chlorobium tepidum tl]]
[[Category: Chlorobium tepidum tl]]
-
[[Category: Crystal structure]]
 
[[Category: Dna-binding]]
[[Category: Dna-binding]]
[[Category: Nucleotide-binding]]
[[Category: Nucleotide-binding]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
[[Category: Sigma-54-dependent transcriptional regulator domain]]
[[Category: Sigma-54-dependent transcriptional regulator domain]]
-
[[Category: Structural genomic]]
 
[[Category: Transcription]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Transcription regulation]]
[[Category: Transcription regulator]]
[[Category: Transcription regulator]]
[[Category: Two-component regulatory system]]
[[Category: Two-component regulatory system]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 20 15:54:17 2010''
 

Current revision

The crystal structure of sigma-54-dependent transcriptional regulator domain from Chlorobium Tepidum TLS

PDB ID 3k2n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools