3l8c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:19, 21 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3l8c.jpg|left|200px]]
 
-
<!--
+
==Structure of probable D-alanine--poly(phosphoribitol) ligase subunit-1 from Streptococcus pyogenes==
-
The line below this paragraph, containing "STRUCTURE_3l8c", creates the "Structure Box" on the page.
+
<StructureSection load='3l8c' size='340' side='right'caption='[[3l8c]], [[Resolution|resolution]] 2.41&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3l8c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_serotype_M6 Streptococcus pyogenes serotype M6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L8C FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.41&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l8c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l8c OCA], [https://pdbe.org/3l8c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l8c RCSB], [https://www.ebi.ac.uk/pdbsum/3l8c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l8c ProSAT]</span></td></tr>
-
{{STRUCTURE_3l8c| PDB=3l8c | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Structure of probable D-alanine--poly(phosphoribitol) ligase subunit-1 from Streptococcus pyogenes===
+
[https://www.uniprot.org/uniprot/DLTA_STRP6 DLTA_STRP6] Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Catalyzes an ATP-dependent two-step reaction where it forms a high energy D-alanyl AMP intermediate and transfers the alanyl residues from AMP to Dcp (By similarity).
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3L8C is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Streptococcus_pyogenes_serotype_m6 Streptococcus pyogenes serotype m6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8C OCA].
+
<jmolCheckbox>
-
[[Category: Streptococcus pyogenes serotype m6]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l8/3l8c_consurf.spt"</scriptWhenChecked>
-
[[Category: Almo, S C.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Burley, S K.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Ramagopal, U A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l8c ConSurf].
-
[[Category: Toro, R.]]
+
<div style="clear:both"></div>
-
[[Category: Atp-binding]]
+
__TOC__
-
[[Category: Cytoplasm]]
+
</StructureSection>
-
[[Category: Dlta]]
+
[[Category: Large Structures]]
-
[[Category: Ligase]]
+
[[Category: Streptococcus pyogenes serotype M6]]
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: Almo SC]]
-
[[Category: Nucleotide-binding]]
+
[[Category: Burley SK]]
-
[[Category: Nysgxrc]]
+
[[Category: Ramagopal UA]]
-
[[Category: Protein structure initiative]]
+
[[Category: Toro R]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 20 16:09:27 2010''
+

Current revision

Structure of probable D-alanine--poly(phosphoribitol) ligase subunit-1 from Streptococcus pyogenes

PDB ID 3l8c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools