This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2yzt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:43, 8 December 2021) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2yzt.png|left|200px]]
 
-
<!--
+
==Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8==
-
The line below this paragraph, containing "STRUCTURE_2yzt", creates the "Structure Box" on the page.
+
<StructureSection load='2yzt' size='340' side='right'caption='[[2yzt]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2yzt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YZT FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzt OCA], [https://pdbe.org/2yzt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yzt RCSB], [https://www.ebi.ac.uk/pdbsum/2yzt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yzt ProSAT], [https://www.topsan.org/Proteins/RSGI/2yzt TOPSAN]</span></td></tr>
-
{{STRUCTURE_2yzt| PDB=2yzt | SCENE= }}
+
</table>
-
 
+
== Evolutionary Conservation ==
-
===Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8===
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzt_consurf.spt"</scriptWhenChecked>
-
2YZT is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZT OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==Reference==
+
</jmolCheckbox>
-
<ref group="xtra">PMID:18338381</ref><references group="xtra"/>
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yzt ConSurf].
-
[[Category: Thermus thermophilus hb8]]
+
<div style="clear:both"></div>
-
[[Category: Ebihara, A.]]
+
__TOC__
-
[[Category: Kuramitsu, S.]]
+
</StructureSection>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Large Structures]]
-
[[Category: Yokoyama, S.]]
+
[[Category: Thet8]]
 +
[[Category: Ebihara, A]]
 +
[[Category: Kuramitsu, S]]
 +
[[Category: Structural genomic]]
 +
[[Category: Yokoyama, S]]
[[Category: National project on protein structural and functional analyse]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Nppsfa]]
-
[[Category: Riken structural genomics/proteomics initiative]]
 
[[Category: Rsgi]]
[[Category: Rsgi]]
-
[[Category: Structural genomic]]
 
[[Category: Uncharacterized conserved protein]]
[[Category: Uncharacterized conserved protein]]
[[Category: Unknown function]]
[[Category: Unknown function]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 20 16:21:19 2010''
 

Current revision

Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8

PDB ID 2yzt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools