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1k4r

From Proteopedia

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{{Seed}}
 
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[[Image:1k4r.png|left|200px]]
 
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<!--
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==Structure of Dengue Virus==
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The line below this paragraph, containing "STRUCTURE_1k4r", creates the "Structure Box" on the page.
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<SX load='1k4r' size='340' side='right' viewer='molstar' caption='[[1k4r]], [[Resolution|resolution]] 24.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1k4r]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Chimeric_Tick-borne_encephalitis_virus/Dengue_virus_4 Chimeric Tick-borne encephalitis virus/Dengue virus 4]. The July 2008 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Dengue Virus'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2008_7 10.2210/rcsb_pdb/mom_2008_7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K4R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K4R FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 24&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k4r OCA], [https://pdbe.org/1k4r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k4r RCSB], [https://www.ebi.ac.uk/pdbsum/1k4r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k4r ProSAT]</span></td></tr>
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{{STRUCTURE_1k4r| PDB=1k4r | SCENE= }}
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</table>
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== Function ==
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===Structure of Dengue Virus===
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[https://www.uniprot.org/uniprot/C3V005_9FLAV C3V005_9FLAV]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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<!--
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Check<jmol>
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The line below this paragraph, {{ABSTRACT_PUBMED_11893341}}, adds the Publication Abstract to the page
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<jmolCheckbox>
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(as it appears on PubMed at http://www.pubmed.gov), where 11893341 is the PubMed ID number.
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k4/1k4r_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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{{ABSTRACT_PUBMED_11893341}}
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==About this Structure==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k4r ConSurf].
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1K4R is a 3 chains structure with sequences from [http://en.wikipedia.org/wiki/Viruses Viruses]. The July 2008 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Dengue Virus'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2008_7 10.2210/rcsb_pdb/mom_2008_7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K4R OCA].
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<div style="clear:both"></div>
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__TOC__
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==Reference==
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</SX>
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<ref group="xtra">PMID:11893341</ref><references group="xtra"/>
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[[Category: Chimeric Tick-borne encephalitis virus/Dengue virus 4]]
[[Category: Dengue Virus]]
[[Category: Dengue Virus]]
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[[Category: Large Structures]]
[[Category: RCSB PDB Molecule of the Month]]
[[Category: RCSB PDB Molecule of the Month]]
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[[Category: Viruses]]
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[[Category: Baker TS]]
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[[Category: Baker, T S.]]
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[[Category: Chipman PR]]
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[[Category: Chipman, P R.]]
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[[Category: Corver J]]
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[[Category: Corver, J.]]
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[[Category: Jones CT]]
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[[Category: Jones, C T.]]
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[[Category: Kuhn RJ]]
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[[Category: Kuhn, R J.]]
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[[Category: Lenches E]]
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[[Category: Lenches, E.]]
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[[Category: Mukhopadhyay S]]
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[[Category: Mukhopadhyay, S.]]
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[[Category: Pletnev SV]]
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[[Category: Pletnev, S V.]]
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[[Category: Rossmann MG]]
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[[Category: Rossmann, M G.]]
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[[Category: Strauss EG]]
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[[Category: Strauss, E G.]]
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[[Category: Strauss JH]]
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[[Category: Strauss, J H.]]
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[[Category: Zhang W]]
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[[Category: Zhang, W.]]
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[[Category: Dengue virus]]
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[[Category: Flaviviridae]]
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[[Category: Flavivirus]]
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[[Category: Glycoprotein e from tick-borne encephalitis virus]]
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[[Category: Icosahedral virus]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 20 22:41:41 2010''
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Current revision

Structure of Dengue Virus

1k4r, resolution 24.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

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