This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3k9c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:00, 26 December 2018) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3k9c.png|left|200px]]
 
-
<!--
+
==Crystal structure of LacI Transcriptional regulator from Rhodococcus species.==
-
The line below this paragraph, containing "STRUCTURE_3k9c", creates the "Structure Box" on the page.
+
<StructureSection load='3k9c' size='340' side='right' caption='[[3k9c]], [[Resolution|resolution]] 2.14&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3k9c]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhojr Rhojr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K9C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K9C FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3k9c| PDB=3k9c | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RHA1_ro05266 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=101510 RHOJR])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k9c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k9c OCA], [http://pdbe.org/3k9c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k9c RCSB], [http://www.ebi.ac.uk/pdbsum/3k9c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3k9c ProSAT]</span></td></tr>
-
===Crystal structure of LacI Transcriptional regulator from Rhodococcus species.===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3K9C is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Rhodococcus_jostii_rha1 Rhodococcus jostii rha1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K9C OCA].
+
<jmolCheckbox>
-
[[Category: Rhodococcus jostii rha1]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k9/3k9c_consurf.spt"</scriptWhenChecked>
-
[[Category: Burley, S K.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Damodharan, L.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Swaminathan, S.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k9c ConSurf].
-
[[Category: 11026w]]
+
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Rhojr]]
 +
[[Category: Burley, S K]]
 +
[[Category: Damodharan, L]]
 +
[[Category: Structural genomic]]
 +
[[Category: Swaminathan, S]]
[[Category: Dna-binding]]
[[Category: Dna-binding]]
[[Category: Laci family protein]]
[[Category: Laci family protein]]
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-
[[Category: Nysgxrc]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-ii]]
+
-
[[Category: Structural genomic]]
+
[[Category: Transcription]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Transcription regulation]]
-
 
+
[[Category: Transcription regulator]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 28 14:36:14 2010''
+

Current revision

Crystal structure of LacI Transcriptional regulator from Rhodococcus species.

3k9c, resolution 2.14Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools