We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

3k9c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:23, 27 November 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3k9c.png|left|200px]]
 
-
<!--
+
==Crystal structure of LacI Transcriptional regulator from Rhodococcus species.==
-
The line below this paragraph, containing "STRUCTURE_3k9c", creates the "Structure Box" on the page.
+
<StructureSection load='3k9c' size='340' side='right'caption='[[3k9c]], [[Resolution|resolution]] 2.14&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3k9c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K9C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3K9C FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.14&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3k9c| PDB=3k9c | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3k9c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k9c OCA], [https://pdbe.org/3k9c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3k9c RCSB], [https://www.ebi.ac.uk/pdbsum/3k9c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3k9c ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of LacI Transcriptional regulator from Rhodococcus species.===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q0S5Y9_RHOJR Q0S5Y9_RHOJR]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3K9C is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Rhodococcus_jostii_rha1 Rhodococcus jostii rha1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K9C OCA].
+
Check<jmol>
-
[[Category: Rhodococcus jostii rha1]]
+
<jmolCheckbox>
-
[[Category: Burley, S K.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k9/3k9c_consurf.spt"</scriptWhenChecked>
-
[[Category: Damodharan, L.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Swaminathan, S.]]
+
</jmolCheckbox>
-
[[Category: 11026w]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k9c ConSurf].
-
[[Category: Dna-binding]]
+
<div style="clear:both"></div>
-
[[Category: Laci family protein]]
+
__TOC__
-
[[Category: New york sgx research center for structural genomic]]
+
</StructureSection>
-
[[Category: Nysgxrc]]
+
[[Category: Large Structures]]
-
[[Category: Protein structure initiative]]
+
[[Category: Rhodococcus jostii RHA1]]
-
[[Category: Psi-ii]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Damodharan L]]
-
[[Category: Transcription]]
+
[[Category: Swaminathan S]]
-
[[Category: Transcription regulation]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 28 14:36:14 2010''
+

Current revision

Crystal structure of LacI Transcriptional regulator from Rhodococcus species.

PDB ID 3k9c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3k9c"
Personal tools