3k3f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:15, 21 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3k3f.png|left|200px]]
 
-
<!--
+
==Crystal Structure of the Urea Transporter from Desulfovibrio Vulgaris==
-
The line below this paragraph, containing "STRUCTURE_3k3f", creates the "Structure Box" on the page.
+
<StructureSection load='3k3f' size='340' side='right'caption='[[3k3f]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3k3f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K3F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3K3F FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AU:GOLD+ION'>AU</scene></td></tr>
-
{{STRUCTURE_3k3f| PDB=3k3f | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3k3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k3f OCA], [https://pdbe.org/3k3f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3k3f RCSB], [https://www.ebi.ac.uk/pdbsum/3k3f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3k3f ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/UT_DESVH UT_DESVH] Urea channel that facilitates transmembrane urea transport down a concentration gradient.<ref>PMID:19865084</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k3/3k3f_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k3f ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of the Urea Transporter from Desulfovibrio Vulgaris===
+
==See Also==
-
 
+
*[[Urea transporter|Urea transporter]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_19865084}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 19865084 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Desulfovibrio vulgaris str. Hildenborough]]
-
{{ABSTRACT_PUBMED_19865084}}
+
[[Category: Large Structures]]
-
 
+
[[Category: Levin EJ]]
-
==About this Structure==
+
[[Category: Zhou M]]
-
3K3F is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._hildenborough Desulfovibrio vulgaris str. hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K3F OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:19865084</ref><references group="xtra"/>
+
-
[[Category: Desulfovibrio vulgaris str. hildenborough]]
+
-
[[Category: Levin, E J.]]
+
-
[[Category: NYCOMPS, New York Consortium on Membrane Protein Structure.]]
+
-
[[Category: Zhou, M.]]
+
-
[[Category: Channel]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: New york consortium on membrane protein structure]]
+
-
[[Category: Nycomp]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transport protein]]
+
-
[[Category: Transporter]]
+
-
[[Category: Urea transport]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 28 14:58:46 2010''
+

Current revision

Crystal Structure of the Urea Transporter from Desulfovibrio Vulgaris

PDB ID 3k3f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3k3f"
Personal tools