This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kjx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:15, 26 December 2018) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3kjx.png|left|200px]]
 
-
<!--
+
==Crystal structure of a transcriptional regulator, Lacl family protein from Silicibacter pomeroyi==
-
The line below this paragraph, containing "STRUCTURE_3kjx", creates the "Structure Box" on the page.
+
<StructureSection load='3kjx' size='340' side='right' caption='[[3kjx]], [[Resolution|resolution]] 2.33&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3kjx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_700808 Atcc 700808]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KJX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KJX FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SPO3684 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=89184 ATCC 700808])</td></tr>
-
{{STRUCTURE_3kjx| PDB=3kjx | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kjx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kjx OCA], [http://pdbe.org/3kjx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kjx RCSB], [http://www.ebi.ac.uk/pdbsum/3kjx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kjx ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of a transcriptional regulator, Lacl family protein from Silicibacter pomeroyi===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3KJX is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KJX OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kj/3kjx_consurf.spt"</scriptWhenChecked>
-
[[Category: Ruegeria pomeroyi]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Burley, S K.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Palani, K.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kjx ConSurf].
-
[[Category: Swaminathan, S.]]
+
<div style="clear:both"></div>
-
[[Category: 11232m]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Atcc 700808]]
 +
[[Category: Burley, S K]]
 +
[[Category: Structural genomic]]
 +
[[Category: Palani, K]]
 +
[[Category: Swaminathan, S]]
[[Category: Dna-binding]]
[[Category: Dna-binding]]
[[Category: Lacl family]]
[[Category: Lacl family]]
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-
[[Category: Nysgxrc]]
+
-
[[Category: Structural genomic]]
+
[[Category: Transcription]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Transcription regulation]]
 +
[[Category: Transcription regulator]]
[[Category: Transcriptional regulator]]
[[Category: Transcriptional regulator]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 28 15:03:37 2010''
 

Current revision

Crystal structure of a transcriptional regulator, Lacl family protein from Silicibacter pomeroyi

3kjx, resolution 2.33Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools