3k40

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{{Seed}}
 
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[[Image:3k40.jpg|left|200px]]
 
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==Crystal structure of Drosophila 3,4-dihydroxyphenylalanine decarboxylase==
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The line below this paragraph, containing "STRUCTURE_3k40", creates the "Structure Box" on the page.
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<StructureSection load='3k40' size='340' side='right'caption='[[3k40]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3k40]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K40 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3K40 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene></td></tr>
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{{STRUCTURE_3k40| PDB=3k40 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3k40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k40 OCA], [https://pdbe.org/3k40 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3k40 RCSB], [https://www.ebi.ac.uk/pdbsum/3k40 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3k40 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DDC_DROME DDC_DROME] Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in life span.<ref>PMID:12881721</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k4/3k40_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k40 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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BACKGROUND: 3,4-Dihydroxyphenylalanine decarboxylase (DDC), also known as aromatic L-amino acid decarboxylase, catalyzes the decarboxylation of a number of aromatic L-amino acids. Physiologically, DDC is responsible for the production of dopamine and serotonin through the decarboxylation of 3,4-dihydroxyphenylalanine and 5-hydroxytryptophan, respectively. In insects, both dopamine and serotonin serve as classical neurotransmitters, neuromodulators, or neurohormones, and dopamine is also involved in insect cuticle formation, eggshell hardening, and immune responses. PRINCIPAL FINDINGS: In this study, we expressed a typical DDC enzyme from Drosophila melanogaster, critically analyzed its substrate specificity and biochemical properties, determined its crystal structure at 1.75 Angstrom resolution, and evaluated the roles residues T82 and H192 play in substrate binding and enzyme catalysis through site-directed mutagenesis of the enzyme. Our results establish that this DDC functions exclusively on the production of dopamine and serotonin, with no activity to tyrosine or tryptophan and catalyzes the formation of serotonin more efficiently than dopamine. CONCLUSIONS: The crystal structure of Drosophila DDC and the site-directed mutagenesis study of the enzyme demonstrate that T82 is involved in substrate binding and that H192 is used not only for substrate interaction, but for cofactor binding of drDDC as well. Through comparative analysis, the results also provide insight into the structure-function relationship of other insect DDC-like proteins.
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===Crystal structure of Drosophila 3,4-dihydroxyphenylalanine decarboxylase===
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Crystal structure and substrate specificity of Drosophila 3,4-dihydroxyphenylalanine decarboxylase.,Han Q, Ding H, Robinson H, Christensen BM, Li J PLoS One. 2010 Jan 21;5(1):e8826. PMID:20098687<ref>PMID:20098687</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3k40" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20098687}}, adds the Publication Abstract to the page
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*[[DOPA decarboxylase|DOPA decarboxylase]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20098687 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20098687}}
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__TOC__
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</StructureSection>
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==About this Structure==
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3K40 is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K40 OCA].
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==Reference==
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<ref group="xtra">PMID:20098687</ref><references group="xtra"/>
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[[Category: Aromatic-L-amino-acid decarboxylase]]
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[[Category: Drosophila melanogaster]]
[[Category: Drosophila melanogaster]]
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[[Category: Christensen, B M.]]
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[[Category: Large Structures]]
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[[Category: Ding, H.]]
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[[Category: Christensen BM]]
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[[Category: Han, Q.]]
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[[Category: Ding H]]
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[[Category: Li, J.]]
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[[Category: Han Q]]
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[[Category: Robinson, H.]]
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[[Category: Li J]]
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[[Category: Alpha beta protein]]
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[[Category: Robinson H]]
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[[Category: Alternative splicing]]
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[[Category: Catecholamine biosynthesis]]
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[[Category: Cg10697-pb isoform b]]
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[[Category: Decarboxylase]]
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[[Category: Lyase]]
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[[Category: Plp dependent protein]]
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[[Category: Polymorphism]]
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[[Category: Pyridoxal phosphate]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 3 09:43:46 2010''
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Current revision

Crystal structure of Drosophila 3,4-dihydroxyphenylalanine decarboxylase

PDB ID 3k40

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