User:Wayne Decatur/SandboxYeastRibosome
From Proteopedia
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{{Template:80ScryoRIBO}} | {{Template:80ScryoRIBO}} | ||
Atomic model of a eukaryotic [[ribosome]] obtained by combined cryo-EM and RNA and protein homology modeling. Specifically, cryo-EM reconstruction of the 80S ribosome from the thermophilic fungus ''Thermomyces lanuginosus'' was used as a guide guide for building homology models of the ''S. cerevisiae'' ribosomal proteins and rRNA sequences that fit the cryo-EM map. | Atomic model of a eukaryotic [[ribosome]] obtained by combined cryo-EM and RNA and protein homology modeling. Specifically, cryo-EM reconstruction of the 80S ribosome from the thermophilic fungus ''Thermomyces lanuginosus'' was used as a guide guide for building homology models of the ''S. cerevisiae'' ribosomal proteins and rRNA sequences that fit the cryo-EM map. | ||
| - | {{Link Toggle FancyCartoonHighQualityView}}. | + | {{Link Toggle FancyCartoonHighQualityView}}. <!--load pdb from uploaded file 3jyxwvALPHAC.pdb.gz --> |
==About this Structure== | ==About this Structure== | ||
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[[3jyv]] is a 19 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermomyces_lanuginosus Thermomyces lanuginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JYV OCA].<br> | [[3jyv]] is a 19 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermomyces_lanuginosus Thermomyces lanuginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JYV OCA].<br> | ||
| - | <scene name='User:Wayne_Decatur/SandboxYeastRibosome/ | + | |
| + | <scene name='User:Wayne_Decatur/SandboxYeastRibosome/Undotest/1'>Testing undo</scene> | ||
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| + | <scene name='User:Wayne_Decatur/SandboxYeastRibosome/Undotest/2'>Test 76</scene> | ||
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| + | <scene name='User:Wayne_Decatur/SandboxYeastRibosome/Undotest/3'>Test 110</scene> | ||
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| + | <scene name='User:Wayne_Decatur/SandboxYeastRibosome/Undotest/4'>Test 116</scene> | ||
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| + | <scene name='User:Wayne_Decatur/SandboxYeastRibosome/Undotest/5'>Test dots</scene> | ||
==Reference== | ==Reference== | ||
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[[Category: Taylor, D J.]] | [[Category: Taylor, D J.]] | ||
[[Category: Topf, M.]] | [[Category: Topf, M.]] | ||
| - | [[Category: | + | [[Category: 80S]] |
[[Category: Eukaryotic ribosome]] | [[Category: Eukaryotic ribosome]] | ||
[[Category: Flexible fitting]] | [[Category: Flexible fitting]] | ||
[[Category: Rack1 protein]] | [[Category: Rack1 protein]] | ||
Current revision
Yeast Ribosome based on Cryo-EM and RNA and Protein Homology Modeling
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(optimized versions of 3jyx and 3jyw and 3jyv ), resolution 8.9Å (). ·· ·· ·· |
Atomic model of a eukaryotic ribosome obtained by combined cryo-EM and RNA and protein homology modeling. Specifically, cryo-EM reconstruction of the 80S ribosome from the thermophilic fungus Thermomyces lanuginosus was used as a guide guide for building homology models of the S. cerevisiae ribosomal proteins and rRNA sequences that fit the cryo-EM map. .
About this Structure
This structure is a composite of 3 pdb files optimized for use online:
3jyx is a 3 chains structure of sequences from Thermomyces lanuginosus. Full crystallographic information is available from OCA.
3jyw is a 30 chains structure of sequences from Thermomyces lanuginosus. Full crystallographic information is available from OCA.
3jyv is a 19 chains structure of sequences from Thermomyces lanuginosus. Full crystallographic information is available from OCA.
Reference
- Taylor DJ, Devkota B, Huang AD, Topf M, Narayanan E, Sali A, Harvey SC, Frank J. Comprehensive molecular structure of the eukaryotic ribosome. Structure. 2009 Dec 9;17(12):1591-604. PMID:20004163 doi:10.1016/j.str.2009.09.015
