This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kg1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:16, 21 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3kg1.png|left|200px]]
 
-
<!--
+
==Crystal structure of SnoaB, a cofactor-independent oxygenase from Streptomyces nogalater, mutant N63A==
-
The line below this paragraph, containing "STRUCTURE_3kg1", creates the "Structure Box" on the page.
+
<StructureSection load='3kg1' size='340' side='right'caption='[[3kg1]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3kg1]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_nogalater Streptomyces nogalater]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KG1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KG1 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
{{STRUCTURE_3kg1| PDB=3kg1 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kg1 OCA], [https://pdbe.org/3kg1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kg1 RCSB], [https://www.ebi.ac.uk/pdbsum/3kg1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kg1 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of SnoaB, a cofactor-independent oxygenase from Streptomyces nogalater, mutant N63A===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/SNOAB_STRNO SNOAB_STRNO] Involved in the biosynthesis of the anthracycline (aromatic polyketide) antibiotic nogalamycin (PubMed:8760909, PubMed:8668120). Catalyzes the oxygenation of 12-deoxy-nogalonic acid at position 12 to yield nogalonic acid (PubMed:19255477, PubMed:20052967).<ref>PMID:8668120</ref> <ref>PMID:8760909</ref> <ref>PMID:19255477</ref> <ref>PMID:20052967</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_20052967}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 20052967 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kg/3kg1_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_20052967}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
3KG1 is a 3 chains structure with sequences from [http://en.wikipedia.org/wiki/Streptomyces_nogalater Streptomyces nogalater]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KG1 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kg1 ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
<ref group="xtra">PMID:20052967</ref><ref group="xtra">PMID:19255477</ref><references group="xtra"/>
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Streptomyces nogalater]]
[[Category: Streptomyces nogalater]]
-
[[Category: Grocholski, T.]]
+
[[Category: Grocholski T]]
-
[[Category: Koskiniemi, H.]]
+
[[Category: Koskiniemi H]]
-
[[Category: Lindqvist, Y.]]
+
[[Category: Lindqvist Y]]
-
[[Category: Mantsala, P.]]
+
[[Category: Mantsala P]]
-
[[Category: Niemi, J.]]
+
[[Category: Niemi J]]
-
[[Category: Schneider, G.]]
+
[[Category: Schneider G]]
-
[[Category: Anthracycline]]
+
-
[[Category: Cofactor-independent]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Oxygenase]]
+
-
[[Category: Polyketide]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 17 09:50:21 2010''
+

Current revision

Crystal structure of SnoaB, a cofactor-independent oxygenase from Streptomyces nogalater, mutant N63A

PDB ID 3kg1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools