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3jyz

From Proteopedia

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{{Seed}}
 
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[[Image:3jyz.png|left|200px]]
 
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<!--
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==Crystal structure of Pseudomonas aeruginosa (strain: Pa110594) typeIV pilin in space group P41212==
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The line below this paragraph, containing "STRUCTURE_3jyz", creates the "Structure Box" on the page.
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<StructureSection load='3jyz' size='340' side='right' caption='[[3jyz]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3jyz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JYZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JYZ FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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-->
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_3jyz| PDB=3jyz | SCENE= }}
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1dzo|1dzo]], [[1qve|1qve]], [[1a2y|1a2y]], [[1q5f|1q5f]], [[1zwt|1zwt]], [[1oqv|1oqv]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pilA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3jyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jyz OCA], [http://pdbe.org/3jyz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3jyz RCSB], [http://www.ebi.ac.uk/pdbsum/3jyz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3jyz ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jy/3jyz_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jyz ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Pseudomonas aeruginosa type IV pili, composed of PilA subunits, are used for attachment and twitching motility on surfaces. P. aeruginosa strains express one of five phylogenetically distinct PilA proteins, four of which are associated with accessory proteins that are involved either in pilin posttranslational modification or in modulation of pilus retraction dynamics. Full understanding of pilin diversity is crucial for the development of a broadly protective pilus-based vaccine. Here, we report the 1.6-A X-ray crystal structure of an N-terminally truncated form of the novel PilA from strain Pa110594 (group V), which represents the first non-group II pilin structure solved. Although it maintains the typical T4a pilin fold, with a long N-terminal alpha-helix and four-stranded antiparallel beta-sheet connected to the C-terminus by a disulfide-bonded loop, the presence of an extra helix in the alphabeta-loop and a disulfide-bonded loop with helical character gives the structure T4b pilin characteristics. Despite the presence of T4b features, the structure of PilA from strain Pa110594 is most similar to the Neisseria gonorrhoeae pilin and is also predicted to assemble into a fiber similar to the GC pilus, based on our comparative pilus modeling. Interactions between surface-exposed areas of the pilin are suggested to contribute to pilus fiber stability. The non-synonymous sequence changes between group III and V pilins are clustered in the same surface-exposed areas, possibly having an effect on accessory protein interactions. However, based on our high-confidence model of group III PilA(PA14), compensatory changes allow for maintenance of a similar shape.
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===Crystal structure of Pseudomonas aeruginosa (strain: Pa110594) typeIV pilin in space group P41212===
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Structural characterization of novel Pseudomonas aeruginosa type IV pilins.,Nguyen Y, Jackson SG, Aidoo F, Junop M, Burrows LL J Mol Biol. 2010 Jan 22;395(3):491-503. Epub 2009 Nov 4. PMID:19895819<ref>PMID:19895819</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3jyz" style="background-color:#fffaf0;"></div>
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<!--
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19895819}}, adds the Publication Abstract to the page
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*[[Pilin|Pilin]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19895819 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19895819}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Aidoo, F]]
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3JYZ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JYZ OCA].
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[[Category: Burrows, L L]]
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[[Category: Jackson, S G]]
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==Reference==
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[[Category: Junop, M S]]
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<ref group="xtra">PMID:19895819</ref><references group="xtra"/>
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[[Category: Nguyen, Y]]
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[[Category: Pseudomonas aeruginosa]]
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[[Category: Aidoo, F.]]
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[[Category: Burrows, L L.]]
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[[Category: Jackson, S G.]]
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[[Category: Junop, M S.]]
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[[Category: Nguyen, Y.]]
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[[Category: Methylation]]
[[Category: Methylation]]
[[Category: Pila]]
[[Category: Pila]]
[[Category: Structural protein]]
[[Category: Structural protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 17 09:54:52 2010''
 

Current revision

Crystal structure of Pseudomonas aeruginosa (strain: Pa110594) typeIV pilin in space group P41212

3jyz, resolution 1.55Å

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